Detailed information NTG0042955

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VFU_RS14500
• Genome accession: NC_016602
• Coordinates: 3114071..3115060 (-)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii NCTC 11218
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3109071..3120060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VFU_RS14480 (vfu_A02978)	recX	3109078..3109548 (-)	471	WP_014205775.1	recombination regulator RecX	-
VFU_RS14485 (vfu_A02979)	recA	3109643..3110695 (-)	1053	WP_004723845.1	recombinase RecA	Machinery gene
VFU_RS14490 (vfu_A02980)	pncC	3110868..3111356 (-)	489	WP_014205776.1	nicotinamide-nucleotide amidase	-
VFU_RS14495 (vfu_A02981)	mutS	3111441..3114002 (+)	2562	WP_014205777.1	DNA mismatch repair protein MutS	-
VFU_RS14500 (vfu_A02982)	rpoS	3114071..3115060 (-)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
VFU_RS14505 (vfu_A02983)	nlpD	3115133..3116068 (-)	936	WP_014205778.1	murein hydrolase activator NlpD	-
VFU_RS14510 (vfu_A02984)	-	3116068..3116694 (-)	627	WP_014205779.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VFU_RS14515 (vfu_A02985)	surE	3116687..3117454 (-)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
VFU_RS14520 (vfu_A02986)	truD	3117447..3118493 (-)	1047	WP_014205780.1	tRNA pseudouridine(13) synthase TruD	-
VFU_RS14525 (vfu_A02987)	ispF	3118525..3119001 (-)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VFU_RS14530 (vfu_A02988)	ispD	3119051..3119764 (-)	714	WP_004723825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VFU_RS14535 (vfu_A02989)	ftsB	3119761..3120045 (-)	285	WP_004723824.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=42955 VFU_RS14500 WP_004723838.1 3114071..3115060(-) (rpoS) [Vibrio furnissii NCTC 11218]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=42955 VFU_RS14500 WP_004723838.1 3114071..3115060(-) (rpoS) [Vibrio furnissii NCTC 11218]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAATCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTCGATGCCA
CTCAGATGTATCTGAGTGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTACTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATCTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAGACTCGTACG
ATTCGTTTACCAATTCATGTGGTGAAAGAGCTGAACATCTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGACCA
CGAACCGACCGCGGAAGAAATTGCCGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGCGATGGTGACAAAGCATTGCTCGATATCATCCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGACGATATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCTCGCCGTTTTGGCTTGTTAGGGTATGAGCCATCAACACTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGCTTGCGCCGACTAAGAGAAATCCTGATGAAACAGGGTTTGAACATG
GAATCGCTGTTTAATGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894