Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   G8O92_RS15140 Genome accession   NZ_CP050027
Coordinates   1589477..1589686 (+) Length   69 a.a.
NCBI ID   WP_014930816.1    Uniprot ID   -
Organism   Listeria monocytogenes strain 1BR16     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1584477..1594686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8O92_RS08025 - 1585008..1585838 (+) 831 WP_003722911.1 MBL fold metallo-hydrolase -
  G8O92_RS08030 htrA 1585936..1587441 (+) 1506 WP_014930814.1 serine protease HtrA -
  G8O92_RS08035 rlmH 1588128..1588607 (+) 480 WP_008946708.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  G8O92_RS08040 - 1589046..1589495 (+) 450 WP_223168478.1 recombinase family protein -
  G8O92_RS15140 ccrB 1589477..1589686 (+) 210 WP_014930816.1 recombinase zinc beta ribbon domain-containing protein Machinery gene
  G8O92_RS08050 - 1589715..1590248 (+) 534 WP_014930817.1 hypothetical protein -
  G8O92_RS08055 - 1590388..1591500 (-) 1113 WP_014600446.1 restriction endonuclease subunit S -
  G8O92_RS08060 - 1591493..1593112 (-) 1620 WP_014600447.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7910.99 Da        Isoelectric Point: 10.3845

>NTDB_id=429501 G8O92_RS15140 WP_014930816.1 1589477..1589686(+) (ccrB) [Listeria monocytogenes strain 1BR16]
MAANNVINRLKDGTKKRIRYYSCFQFRNKGASVCHANSIRADQAEQFVAERLKETVQHPQIIKEVNSST

Nucleotide


Download         Length: 210 bp        

>NTDB_id=429501 G8O92_RS15140 WP_014930816.1 1589477..1589686(+) (ccrB) [Listeria monocytogenes strain 1BR16]
ATGGCAGCAAATAATGTGATCAATCGACTAAAGGATGGAACCAAAAAACGTATTCGGTATTATTCCTGTTTTCAATTTCG
AAATAAAGGAGCGAGTGTTTGCCATGCGAATTCAATCCGAGCAGATCAAGCAGAACAGTTTGTGGCTGAAAGGTTGAAGG
AAACCGTTCAACACCCACAAATTATAAAAGAAGTTAATTCAAGCACTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

58.462

94.203

0.551