Detailed information NTG0042941

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: VFU_RS10350
• Genome accession: NC_016602
• Coordinates: 2212624..2214045 (+)
• Length: 473 a.a.
• NCBI ID: WP_014205223.1
• Uniprot ID: -
• Organism: Vibrio furnissii NCTC 11218
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2207624..2219045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VFU_RS10315	-	2208543..2208755 (-)	213	WP_148227981.1	hypothetical protein	-
VFU_RS10320	-	2209203..2209523 (+)	321	WP_032081666.1	hypothetical protein	-
VFU_RS10325 (vfu_A02116)	-	2209513..2209956 (+)	444	WP_014205219.1	hypothetical protein	-
VFU_RS10335 (vfu_A02117)	-	2210490..2211290 (-)	801	WP_014205220.1	hypothetical protein	-
VFU_RS10340	-	2211562..2211807 (+)	246	WP_041942566.1	hypothetical protein	-
VFU_RS10345 (vfu_A02121)	-	2212338..2212625 (-)	288	WP_014205222.1	integrase	-
VFU_RS10350 (vfu_A02120)	sbcB	2212624..2214045 (+)	1422	WP_014205223.1	exodeoxyribonuclease I	Machinery gene
VFU_RS10355 (vfu_A02122)	-	2214086..2214460 (+)	375	WP_014205224.1	CidA/LrgA family protein	-
VFU_RS10360 (vfu_A02123)	-	2214451..2215131 (+)	681	WP_014205225.1	LrgB family protein	-
VFU_RS10365 (vfu_A02124)	cdd	2215340..2216227 (+)	888	WP_014205226.1	cytidine deaminase	-
VFU_RS10370 (vfu_A02125)	-	2216318..2219023 (-)	2706	WP_014205227.1	bifunctional diguanylate cyclase/phosphodiesterase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54388.77 Da
• Isoelectric Point: 4.8928

>NTDB_id=42941 VFU_RS10350 WP_014205223.1 2212624..2214045(+) (sbcB) [Vibrio furnissii NCTC 11218]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPTPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=42941 VFU_RS10350 WP_014205223.1 2212624..2214045(+) (sbcB) [Vibrio furnissii NCTC 11218]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCAGATT
ACCTACCGACGCCAGAAGCCGCGCTGATTACTGGTATCATTCCGCAAAAAGCGATGGCGCAAGGGCTGCCTGAGCCCGAA
TTCATCGCCAAAATTCACGCTGAATTATCGACACCAAACACCACGAGCCTTGGGTACAACAGCATTCGTTTTGACGATGA
AGTCACCCGCTACACCTGTTATCGCAACTTCCTTGATCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TACTGGATGTGATGCGTGCATGCCACGCATTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTTAAGCTGGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCACACGATGCGATGGCGGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTGCCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGACCCGCAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCAGATGAATTACCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTGGCTCCAGCAAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAACGATGTGGATACGCAGCTCTATGACGGGTTCTTCTCCCCTGCAG
ATAAAGCCGCGATGGAAATTATTCGTTCCACGAATCCTGAACTGCTCGGTGAGCTGGATATCACGTTCAGCGACAAACGC
ATTGAACCCCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACGCTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACACATCTGCCTGATTACATGCTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.227	99.577	0.829