Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VFU_RS04335 Genome accession   NC_016602
Coordinates   905497..906114 (-) Length   205 a.a.
NCBI ID   WP_014204466.1    Uniprot ID   A0A0Q2MAY4
Organism   Vibrio furnissii NCTC 11218     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 900497..911114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS04325 (vfu_A00881) aceF 901786..903678 (+) 1893 WP_004729064.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  VFU_RS04330 (vfu_A00882) lpdA 903951..905378 (+) 1428 WP_004729062.1 dihydrolipoyl dehydrogenase -
  VFU_RS04335 (vfu_A00883) opaR 905497..906114 (-) 618 WP_014204466.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  VFU_RS04340 (vfu_A00885) hpt 906435..906962 (+) 528 WP_004729056.1 hypoxanthine phosphoribosyltransferase -
  VFU_RS04345 (vfu_A00886) can 907010..907678 (-) 669 WP_004729053.1 carbonate dehydratase -
  VFU_RS04350 (vfu_A00887) - 908021..908938 (+) 918 WP_014204467.1 ABC transporter ATP-binding protein -
  VFU_RS04355 (vfu_A00888) - 908944..909714 (+) 771 WP_004729049.1 ABC transporter permease -
  VFU_RS04360 (vfu_A00889) panC 909789..910670 (-) 882 WP_004729048.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23851.20 Da        Isoelectric Point: 6.2312

>NTDB_id=42938 VFU_RS04335 WP_014204466.1 905497..906114(-) (opaR) [Vibrio furnissii NCTC 11218]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFANRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDMHAKDNIANITREMVRLANDDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLLKNMFSKAIERGEVCEQHDA
DDLATLFHGVCYSLFVQANRVRDEGYMQKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=42938 VFU_RS04335 WP_014204466.1 905497..906114(-) (opaR) [Vibrio furnissii NCTC 11218]
ATGGACGCATCGATAGAGAAACGCCCTAGAACGCGGCTATCTCCCCAAAAACGTAAACTTCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAATCGTGGGATTGGTCGTGGCGGTCACGCCGACATCGCAGAAATTGCTCAAGTTTCTGTCGCGACCG
TATTCAACTACTTCCCAACGCGCGAAGATTTGGTCGACGACGTACTCACTTACGTGGTTCGTCAGTTCTCCAACTTCCTG
ACCGACAACATCGATCTGGACATGCACGCAAAAGACAACATTGCGAACATCACCCGCGAAATGGTTCGTCTGGCCAATGA
CGATTGCCACTGGCTGAAAGTGTGGTTTGAGTGGAGCGCATCCACCCGTGATGAGGTGTGGCCCCTGTTTGTGTCGAGCA
ACCGCACCAACCAACTGCTGCTGAAAAACATGTTCTCAAAAGCGATTGAACGGGGTGAAGTATGCGAGCAACACGATGCA
GATGATCTGGCTACGCTGTTCCATGGCGTGTGCTACTCCCTGTTCGTGCAAGCAAACCGTGTACGCGATGAAGGCTACAT
GCAGAAGCTGGTGAAGAGCTACCTCGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2MAY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.198

98.537

0.79
  hapR Vibrio cholerae C6706

77.723

98.537

0.766
  hapR Vibrio cholerae strain A1552

77.723

98.537

0.766

Multiple sequence alignment