Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VFU_RS02910 Genome accession   NC_016602
Coordinates   613755..614762 (+) Length   335 a.a.
NCBI ID   WP_004728525.1    Uniprot ID   -
Organism   Vibrio furnissii NCTC 11218     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 608755..619762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS02890 (vfu_A00583) metJ 608902..609219 (+) 318 WP_004728521.1 met regulon transcriptional regulator MetJ -
  VFU_RS02895 (vfu_A00584) - 609296..610570 (-) 1275 WP_014204309.1 malic enzyme-like NAD(P)-binding protein -
  VFU_RS02900 (vfu_A00585) rpmE 610781..610999 (-) 219 WP_004728523.1 50S ribosomal protein L31 -
  VFU_RS02905 (vfu_A00586) priA 611246..613447 (+) 2202 WP_014204310.1 primosomal protein N' -
  VFU_RS02910 (vfu_A00587) cytR 613755..614762 (+) 1008 WP_004728525.1 DNA-binding transcriptional regulator CytR Regulator
  VFU_RS02915 (vfu_A00588) - 614892..615443 (+) 552 WP_041942466.1 SPOR domain-containing protein -
  VFU_RS02920 (vfu_A00589) hslV 615582..616139 (+) 558 WP_014204312.1 ATP-dependent protease subunit HslV -
  VFU_RS02925 (vfu_A00591) hslU 616176..617508 (+) 1333 Protein_543 HslU--HslV peptidase ATPase subunit -
  VFU_RS02930 (vfu_A00592) - 617602..618519 (+) 918 WP_014204315.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  VFU_RS02935 (vfu_A00593) rraA 618595..619131 (+) 537 WP_004728530.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36886.40 Da        Isoelectric Point: 6.3510

>NTDB_id=42928 VFU_RS02910 WP_004728525.1 613755..614762(+) (cytR) [Vibrio furnissii NCTC 11218]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQIAGPEAAVLCQFRQQGYQQALRRAGISRNPTYSTIGDFTFESGAKAVRQLMALPEPPTA
IFCHNDTMAIGAIQEAKRLGMRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLD
TQLVIRESAAPPRSA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=42928 VFU_RS02910 WP_004728525.1 613755..614762(+) (cytR) [Vibrio furnissii NCTC 11218]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTATCGACGGCGACAGTCTCGCGCGCTCTGATGAATCCCGAGAA
AGTTTCAGCCTCAACCCGTAAACGGGTTGAAGAGGCGGTTTTAGAAGCTGGCTATTCACCGAATTCTTTAGCCCGAAATC
TGCGTCGCAATGAATCGAAAACCATTGTCGCGATCGTGCCGGACATCTGTGATCCTTATTACACCGAAATTATTCGTGGT
ATCGAAGACGCCGCGATGGAACACGGTTATCTGGTACTGCTGGGTGACAGTGGTCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACTTGGTGTTTACCAAACAGGCGGACGGTATGCTATTGCTGGGGACCGATTTGCCGTTTGACGTGAGCAAACCTG
AGCAAAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCAGAACTTGAATTGCCGACGGTGCATATCGATAAC
CTGACATCTGCCTTTGAAGCGGTGAACTATCTGACGCAGATGGGGCACAAACGCATCGCGCAGATTGCCGGCCCTGAAGC
GGCGGTGTTGTGTCAGTTCCGTCAGCAAGGGTATCAACAAGCCCTGCGTCGCGCGGGGATTTCACGCAATCCAACCTACA
GTACCATTGGTGACTTTACGTTTGAGTCGGGTGCCAAAGCGGTGCGCCAATTGATGGCCCTGCCGGAGCCGCCGACAGCC
ATTTTCTGTCACAACGATACCATGGCGATTGGTGCCATTCAGGAAGCCAAGCGTTTGGGCATGCGTGTGCCGCAAGACCT
GTCTGTGGTCGGCTTTGATGACATTCAGTTTGCGCAGTACTGCGATCCACCGCTAACCACCATTTCTCAGCCGCGTTACG
AGATCGGCCGTCAGGCGATGTTGATGATGCTTGAGTTACTGCGGGGTCATGATGTGCGTGCGGGCTCGCGTCTGCTCGAC
ACCCAATTGGTCATTCGCGAGAGTGCAGCGCCGCCCCGCTCGGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.373

99.104

0.925
  cytR Vibrio parahaemolyticus RIMD 2210633

90.149

100

0.901

Multiple sequence alignment