Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D7S_RS06055 Genome accession   NC_017846
Coordinates   1231982..1232617 (+) Length   211 a.a.
NCBI ID   WP_005594855.1    Uniprot ID   A0A5D0EK75
Organism   Aggregatibacter actinomycetemcomitans D7S-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226982..1237617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7S_RS06030 (D7S_01308) xylA 1227670..1228989 (+) 1320 WP_014702399.1 xylose isomerase -
  D7S_RS06035 (D7S_01310) xylB 1229039..1230511 (+) 1473 Protein_1154 xylulokinase -
  D7S_RS06045 (D7S_01312) - 1231106..1231351 (+) 246 Protein_1155 bacteriophage T4 gp5 trimerisation domain-containing protein -
  D7S_RS06055 (D7S_01313) sxy/tfoX 1231982..1232617 (+) 636 WP_005594855.1 TfoX/Sxy family DNA transformation protein Regulator
  D7S_RS06060 (D7S_01314) rpoH 1232684..1233532 (-) 849 WP_005548833.1 RNA polymerase sigma factor RpoH -
  D7S_RS06065 (D7S_01316) - 1233717..1234031 (-) 315 Protein_1158 DUF2322 family protein -
  D7S_RS06070 (D7S_01317) murB 1234047..1235072 (-) 1026 WP_005541968.1 UDP-N-acetylmuramate dehydrogenase -
  D7S_RS06075 (D7S_01318) narQ 1235087..1236790 (-) 1704 WP_014702402.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  D7S_RS06080 (D7S_01320) - 1237066..1237350 (+) 285 WP_005548831.1 chaperone NapD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23994.17 Da        Isoelectric Point: 10.4976

>NTDB_id=42897 D7S_RS06055 WP_005594855.1 1231982..1232617(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans D7S-1]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKIAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=42897 D7S_RS06055 WP_005594855.1 1231982..1232617(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAATCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGTTTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0EK75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.513

92.417

0.374
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

36.538

98.578

0.36

Multiple sequence alignment