Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | G9U56_RS06550 | Genome accession | NZ_CP049940 |
| Coordinates | 1287368..1287895 (-) | Length | 175 a.a. |
| NCBI ID | WP_277375511.1 | Uniprot ID | - |
| Organism | Weissella paramesenteroides strain W31 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1257388..1301513 | 1287368..1287895 | within | 0 |
Gene organization within MGE regions
Location: 1257388..1301513
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9U56_RS06365 | - | 1257388..1258491 (-) | 1104 | WP_277375482.1 | GH25 family lysozyme | - |
| G9U56_RS06370 (G9U56_06320) | - | 1258502..1258786 (-) | 285 | WP_277375483.1 | phage holin | - |
| G9U56_RS06375 (G9U56_06325) | - | 1258803..1259036 (-) | 234 | WP_277375484.1 | hypothetical protein | - |
| G9U56_RS06380 (G9U56_06330) | - | 1259049..1259318 (-) | 270 | WP_277375485.1 | hypothetical protein | - |
| G9U56_RS06385 (G9U56_06335) | - | 1259321..1259716 (-) | 396 | WP_277375486.1 | hypothetical protein | - |
| G9U56_RS06390 (G9U56_06340) | - | 1259731..1264533 (-) | 4803 | WP_277375487.1 | phage tail spike protein | - |
| G9U56_RS06395 (G9U56_06345) | - | 1264530..1265336 (-) | 807 | WP_277375488.1 | distal tail protein Dit | - |
| G9U56_RS06400 (G9U56_06350) | - | 1265355..1268852 (-) | 3498 | WP_277375489.1 | phage tail tape measure protein | - |
| G9U56_RS06405 (G9U56_06355) | - | 1268853..1269185 (-) | 333 | WP_284566574.1 | hypothetical protein | - |
| G9U56_RS06410 (G9U56_06360) | - | 1269278..1269616 (-) | 339 | WP_277375491.1 | tail assembly chaperone | - |
| G9U56_RS06415 (G9U56_06365) | - | 1269740..1270303 (-) | 564 | WP_277375492.1 | phage major tail protein, TP901-1 family | - |
| G9U56_RS06420 (G9U56_06370) | - | 1270319..1270714 (-) | 396 | WP_277375493.1 | hypothetical protein | - |
| G9U56_RS06425 (G9U56_06375) | - | 1270711..1271085 (-) | 375 | WP_277375494.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| G9U56_RS06430 (G9U56_06380) | - | 1271075..1271389 (-) | 315 | WP_277375495.1 | hypothetical protein | - |
| G9U56_RS06435 (G9U56_06385) | - | 1271399..1271743 (-) | 345 | WP_277375496.1 | phage head-tail connector protein | - |
| G9U56_RS06440 (G9U56_06390) | - | 1271761..1272042 (-) | 282 | WP_277375497.1 | phosphoenolpyruvate synthase | - |
| G9U56_RS06445 (G9U56_06395) | - | 1272108..1272935 (-) | 828 | WP_002828438.1 | N4-gp56 family major capsid protein | - |
| G9U56_RS06450 (G9U56_06400) | - | 1272939..1273535 (-) | 597 | WP_277375498.1 | DUF4355 domain-containing protein | - |
| G9U56_RS06455 (G9U56_06405) | - | 1273703..1274668 (-) | 966 | WP_277375499.1 | minor capsid protein | - |
| G9U56_RS06460 (G9U56_06410) | - | 1274658..1276151 (-) | 1494 | WP_277375500.1 | phage portal protein | - |
| G9U56_RS06465 (G9U56_06415) | - | 1276162..1277451 (-) | 1290 | WP_277375501.1 | PBSX family phage terminase large subunit | - |
| G9U56_RS06470 (G9U56_06420) | - | 1277444..1277950 (-) | 507 | WP_277375502.1 | terminase small subunit | - |
| G9U56_RS06475 (G9U56_06425) | - | 1278221..1278793 (-) | 573 | WP_275016523.1 | hypothetical protein | - |
| G9U56_RS06480 (G9U56_06430) | - | 1279370..1279576 (-) | 207 | WP_002828449.1 | CsbD family protein | - |
| G9U56_RS06485 (G9U56_06435) | - | 1279675..1279926 (-) | 252 | WP_040760815.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| G9U56_RS06495 (G9U56_06445) | - | 1280290..1280730 (-) | 441 | WP_277375503.1 | DUF722 domain-containing protein | - |
| G9U56_RS06500 (G9U56_06450) | - | 1280914..1282572 (+) | 1659 | WP_277375504.1 | hypothetical protein | - |
| G9U56_RS06505 (G9U56_06455) | - | 1282732..1283187 (-) | 456 | WP_277375505.1 | GAF domain-containing protein | - |
| G9U56_RS06510 (G9U56_06460) | pnuC | 1283255..1283950 (-) | 696 | WP_002828454.1 | nicotinamide riboside transporter PnuC | - |
| G9U56_RS06515 (G9U56_06465) | - | 1284075..1284260 (-) | 186 | WP_002828455.1 | hypothetical protein | - |
| G9U56_RS06520 (G9U56_06470) | - | 1284260..1284886 (-) | 627 | WP_277375506.1 | hypothetical protein | - |
| G9U56_RS06525 (G9U56_06475) | - | 1284886..1285125 (-) | 240 | WP_284566575.1 | hypothetical protein | - |
| G9U56_RS06530 (G9U56_06480) | - | 1285169..1285606 (-) | 438 | WP_277375508.1 | dTDP-glucose pyrophosphorylase | - |
| G9U56_RS06535 (G9U56_06485) | - | 1285594..1285764 (-) | 171 | WP_277375509.1 | hypothetical protein | - |
| G9U56_RS06540 (G9U56_06490) | - | 1285767..1286492 (-) | 726 | WP_277375510.1 | ATP-binding protein | - |
| G9U56_RS06545 (G9U56_06495) | - | 1286479..1287357 (-) | 879 | WP_259705399.1 | phage replisome organizer N-terminal domain-containing protein | - |
| G9U56_RS06550 (G9U56_06500) | ssb | 1287368..1287895 (-) | 528 | WP_277375511.1 | single-stranded DNA-binding protein | Machinery gene |
| G9U56_RS06555 (G9U56_06505) | - | 1287858..1288568 (-) | 711 | WP_277375513.1 | putative HNHc nuclease | - |
| G9U56_RS06560 (G9U56_06510) | - | 1288568..1289209 (-) | 642 | WP_277375514.1 | ERF family protein | - |
| G9U56_RS06565 (G9U56_06515) | - | 1289193..1289387 (-) | 195 | WP_277375515.1 | hypothetical protein | - |
| G9U56_RS06570 (G9U56_06520) | - | 1289453..1289659 (-) | 207 | WP_277375516.1 | helix-turn-helix transcriptional regulator | - |
| G9U56_RS06575 (G9U56_06525) | - | 1289663..1290022 (-) | 360 | WP_277375517.1 | hypothetical protein | - |
| G9U56_RS06580 (G9U56_06530) | - | 1290136..1290345 (-) | 210 | WP_277375518.1 | hypothetical protein | - |
| G9U56_RS06585 (G9U56_06535) | - | 1290347..1290541 (-) | 195 | WP_140837452.1 | hypothetical protein | - |
| G9U56_RS06590 (G9U56_06540) | - | 1290659..1290871 (+) | 213 | WP_277375519.1 | hypothetical protein | - |
| G9U56_RS06595 (G9U56_06545) | - | 1291210..1291695 (+) | 486 | WP_284566576.1 | hypothetical protein | - |
| G9U56_RS06600 (G9U56_06550) | - | 1291825..1292550 (-) | 726 | WP_277375521.1 | Rha family transcriptional regulator | - |
| G9U56_RS06605 (G9U56_06555) | - | 1292569..1292796 (-) | 228 | WP_040760834.1 | helix-turn-helix domain-containing protein | - |
| G9U56_RS06610 (G9U56_06560) | - | 1293061..1293411 (+) | 351 | WP_277375522.1 | helix-turn-helix transcriptional regulator | - |
| G9U56_RS06615 (G9U56_06565) | - | 1293487..1293978 (+) | 492 | WP_277375523.1 | hypothetical protein | - |
| G9U56_RS06620 (G9U56_06570) | - | 1294056..1294712 (+) | 657 | WP_277375524.1 | Ltp family lipoprotein | - |
| G9U56_RS06625 (G9U56_06575) | - | 1294882..1295958 (+) | 1077 | WP_277375526.1 | site-specific integrase | - |
| G9U56_RS06635 (G9U56_06585) | - | 1296253..1296759 (-) | 507 | WP_150177836.1 | antibiotic biosynthesis monooxygenase | - |
| G9U56_RS06640 (G9U56_06590) | - | 1296853..1297581 (-) | 729 | WP_002828485.1 | type II CAAX endopeptidase family protein | - |
| G9U56_RS06645 (G9U56_06595) | - | 1297568..1297774 (-) | 207 | WP_040760843.1 | hypothetical protein | - |
| G9U56_RS06650 (G9U56_06600) | - | 1297779..1298615 (-) | 837 | WP_002828487.1 | Cof-type HAD-IIB family hydrolase | - |
| G9U56_RS06655 (G9U56_06605) | mscL | 1298795..1299187 (+) | 393 | WP_277375527.1 | large conductance mechanosensitive channel protein MscL | - |
| G9U56_RS06660 (G9U56_06610) | - | 1299378..1300016 (+) | 639 | WP_002828489.1 | deoxynucleoside kinase | - |
| G9U56_RS06665 (G9U56_06615) | - | 1300089..1301513 (-) | 1425 | WP_277362326.1 | C40 family peptidase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19659.59 Da Isoelectric Point: 9.8781
>NTDB_id=428876 G9U56_RS06550 WP_277375511.1 1287368..1287895(-) (ssb) [Weissella paramesenteroides strain W31]
MINNVTLTGRLTKDMELKYTTSGTAVASATVAVERSFTDGNGERGSDFINFVIWRKAAENMAKMTAKGSLIGLEGRLQTR
SYDNQQRQKVFVTEVVVNNFSLLESKEVTDQRKQGGVSQPQQNNFNQQPQRQNNFNQQQAPQGNFNQQRQQPQQNNFGGS
QGYGNGNNFEDQLPF
MINNVTLTGRLTKDMELKYTTSGTAVASATVAVERSFTDGNGERGSDFINFVIWRKAAENMAKMTAKGSLIGLEGRLQTR
SYDNQQRQKVFVTEVVVNNFSLLESKEVTDQRKQGGVSQPQQNNFNQQPQRQNNFNQQQAPQGNFNQQRQQPQQNNFGGS
QGYGNGNNFEDQLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=428876 G9U56_RS06550 WP_277375511.1 1287368..1287895(-) (ssb) [Weissella paramesenteroides strain W31]
ATGATAAACAACGTCACACTAACTGGCAGACTAACTAAAGATATGGAGTTGAAATATACCACGTCAGGTACAGCCGTAGC
CAGTGCAACAGTAGCAGTTGAACGTTCATTTACTGACGGTAATGGTGAACGAGGTAGTGACTTTATTAACTTTGTTATTT
GGCGTAAGGCGGCTGAAAATATGGCAAAAATGACCGCTAAAGGTTCATTGATTGGACTGGAAGGACGTTTGCAAACACGT
AGCTATGATAACCAGCAAAGGCAAAAAGTATTCGTTACCGAAGTAGTTGTTAATAATTTCTCGTTATTAGAAAGCAAGGA
AGTGACTGACCAACGTAAGCAAGGTGGGGTTAGTCAACCACAGCAAAATAACTTTAATCAACAGCCACAGCGACAAAACA
ATTTCAACCAACAGCAAGCACCACAAGGAAACTTCAATCAACAACGCCAACAACCACAACAAAATAATTTTGGTGGATCA
CAGGGATATGGCAACGGCAATAACTTTGAAGACCAATTGCCGTTCTAG
ATGATAAACAACGTCACACTAACTGGCAGACTAACTAAAGATATGGAGTTGAAATATACCACGTCAGGTACAGCCGTAGC
CAGTGCAACAGTAGCAGTTGAACGTTCATTTACTGACGGTAATGGTGAACGAGGTAGTGACTTTATTAACTTTGTTATTT
GGCGTAAGGCGGCTGAAAATATGGCAAAAATGACCGCTAAAGGTTCATTGATTGGACTGGAAGGACGTTTGCAAACACGT
AGCTATGATAACCAGCAAAGGCAAAAAGTATTCGTTACCGAAGTAGTTGTTAATAATTTCTCGTTATTAGAAAGCAAGGA
AGTGACTGACCAACGTAAGCAAGGTGGGGTTAGTCAACCACAGCAAAATAACTTTAATCAACAGCCACAGCGACAAAACA
ATTTCAACCAACAGCAAGCACCACAAGGAAACTTCAATCAACAACGCCAACAACCACAACAAAATAATTTTGGTGGATCA
CAGGGATATGGCAACGGCAATAACTTTGAAGACCAATTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.934 |
100 |
0.537 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |