Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G8D99_RS01795 Genome accession   NZ_CP049916
Coordinates   396073..396711 (-) Length   212 a.a.
NCBI ID   WP_166322078.1    Uniprot ID   A0A6G8S1M0
Organism   Acinetobacter lanii strain 185     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391073..401711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8D99_RS01760 (G8D99_01760) mlaE 391269..392048 (+) 780 WP_166322066.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  G8D99_RS01765 (G8D99_01765) - 392048..392728 (+) 681 WP_166322068.1 outer membrane lipid asymmetry maintenance protein MlaD -
  G8D99_RS01770 (G8D99_01770) - 392746..393378 (+) 633 WP_166322070.1 phospholipid-binding protein MlaC -
  G8D99_RS01775 (G8D99_01775) - 393421..393708 (+) 288 WP_166322072.1 STAS domain-containing protein -
  G8D99_RS01780 (G8D99_01780) - 393817..394830 (-) 1014 WP_166322074.1 CorA family divalent cation transporter -
  G8D99_RS01785 (G8D99_01785) - 394990..395586 (+) 597 WP_166322076.1 TIGR00730 family Rossman fold protein -
  G8D99_RS01790 (G8D99_01790) - 395612..396012 (+) 401 Protein_347 NUDIX domain-containing protein -
  G8D99_RS01795 (G8D99_01795) comF 396073..396711 (-) 639 WP_166322078.1 ComF family protein Machinery gene
  G8D99_RS01800 (G8D99_01800) recG 396854..398899 (-) 2046 WP_166322080.1 ATP-dependent DNA helicase RecG -
  G8D99_RS01805 (G8D99_01805) plsB 399109..401682 (-) 2574 WP_166322082.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24568.63 Da        Isoelectric Point: 9.0573

>NTDB_id=428629 G8D99_RS01795 WP_166322078.1 396073..396711(-) (comF) [Acinetobacter lanii strain 185]
MKTIDTVHALIQRIIQPCFPCQLCGIDAQQSHSLCQQCWQQLPWLKDTILRQHRPIQIALNYTFPIDRIIQSYKYEQQLH
FQNLLTQSLISLNLSQVQAIVPMPISTERLRERGYNQMLIIANRMAQQFNIPVWQPVLRLAQHSQKGLSRVERMQNIEQQ
FQIIKSERRKYRKVLIIDDVVTTGSSVDALANALEKLGCQHIDIACIAAAQQ

Nucleotide


Download         Length: 639 bp        

>NTDB_id=428629 G8D99_RS01795 WP_166322078.1 396073..396711(-) (comF) [Acinetobacter lanii strain 185]
ATGAAGACAATAGATACAGTGCATGCACTTATTCAACGCATCATTCAGCCCTGCTTCCCTTGCCAACTGTGTGGCATCGA
TGCTCAACAAAGCCATTCACTGTGTCAGCAGTGTTGGCAACAATTACCTTGGCTGAAAGACACTATCCTGCGTCAGCATC
GACCGATTCAGATCGCGTTAAATTACACTTTCCCCATCGATCGCATCATTCAAAGCTATAAATATGAGCAACAATTGCAT
TTTCAAAATCTTCTCACTCAAAGTTTAATATCTTTGAATTTAAGTCAAGTCCAAGCCATTGTTCCGATGCCTATTTCTAC
AGAAAGACTCCGTGAACGGGGGTATAACCAAATGCTGATCATTGCCAACCGTATGGCGCAACAATTCAATATTCCGGTTT
GGCAACCGGTACTGCGTTTAGCTCAACATTCGCAAAAAGGCTTAAGCCGAGTCGAGCGTATGCAAAATATCGAGCAACAA
TTTCAAATCATTAAATCTGAACGACGTAAGTATCGTAAAGTCTTGATCATTGATGATGTGGTCACCACAGGAAGCTCAGT
CGATGCCTTGGCCAATGCTTTAGAGAAACTCGGTTGCCAACACATTGATATCGCATGTATTGCAGCAGCACAACAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(120-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8S1M0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

57.286

93.868

0.538
  comF Acinetobacter baumannii D1279779

57.286

93.868

0.538