Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DESOR_RS22545 Genome accession   NC_016584
Coordinates   4886569..4887504 (-) Length   311 a.a.
NCBI ID   WP_014186907.1    Uniprot ID   G7WEC4
Organism   Desulfosporosinus orientis DSM 765     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4881569..4892504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESOR_RS22525 (Desor_4692) - 4882687..4883055 (-) 369 WP_014186903.1 putative DNA-binding protein -
  DESOR_RS22530 (Desor_4693) - 4883128..4884432 (-) 1305 WP_014186904.1 amidohydrolase -
  DESOR_RS22535 (Desor_4694) mtnA 4884734..4885771 (-) 1038 WP_014186905.1 S-methyl-5-thioribose-1-phosphate isomerase -
  DESOR_RS22540 (Desor_4695) mtnP 4885787..4886569 (-) 783 WP_014186906.1 S-methyl-5'-thioadenosine phosphorylase -
  DESOR_RS22545 (Desor_4696) pilA 4886569..4887504 (-) 936 WP_014186907.1 signal recognition particle-docking protein FtsY Machinery gene
  DESOR_RS22550 (Desor_4697) smc 4887531..4891127 (-) 3597 WP_014186908.1 chromosome segregation protein SMC -
  DESOR_RS22555 (Desor_4698) rnc 4891114..4891899 (-) 786 WP_014186909.1 ribonuclease III -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33874.96 Da        Isoelectric Point: 5.0813

>NTDB_id=42860 DESOR_RS22545 WP_014186907.1 4886569..4887504(-) (pilA) [Desulfosporosinus orientis DSM 765]
MAGFFAKLKEGLTKTRQNFVGKVEEVFTGRKKIDEELYEELEEVLITSDVGVNTSFELVERLRKEVKQRKISDPNELTGV
LQELIAELLGEETGIAFAKQGPSIILVVGVNGVGKTTTIGKLANWLKKDGKRVLLAAGDTFRAAAIDQLEVWGERSGAEV
IKQREGADPAAVAYDAVQAAKSRNVDVVIVDTAGRLHNKVNLMEELRKVKRVMEREIPGAPHEVLLVLDATTGQNALQQA
KLFQEVAGVTGIVLTKLDGTAKGGVVIGIQGETRIPVKWIGIGEGMEDLRPFVPEDFAAALFGKQDKEESF

Nucleotide


Download         Length: 936 bp        

>NTDB_id=42860 DESOR_RS22545 WP_014186907.1 4886569..4887504(-) (pilA) [Desulfosporosinus orientis DSM 765]
ATGGCAGGTTTTTTTGCAAAGTTGAAAGAAGGCCTTACCAAAACTCGACAAAATTTTGTGGGAAAAGTCGAGGAAGTTTT
TACAGGCCGTAAGAAAATTGACGAAGAGTTATATGAAGAATTGGAAGAAGTGCTGATCACTTCCGACGTGGGGGTTAATA
CATCCTTTGAATTAGTGGAGCGGCTGCGCAAAGAAGTAAAACAGCGCAAAATATCGGATCCCAATGAGCTGACAGGGGTT
CTGCAGGAATTGATTGCCGAATTATTGGGAGAGGAAACGGGTATTGCCTTTGCTAAGCAGGGCCCTAGTATTATCCTGGT
AGTGGGGGTTAACGGAGTAGGCAAGACCACCACCATCGGCAAGCTGGCCAATTGGCTGAAAAAAGACGGCAAAAGGGTTT
TATTGGCTGCCGGTGATACCTTTCGGGCGGCAGCTATTGATCAATTAGAAGTTTGGGGAGAACGGTCCGGGGCAGAAGTC
ATCAAACAGCGGGAAGGAGCTGACCCGGCAGCCGTAGCCTATGATGCTGTACAGGCCGCTAAGTCGCGGAATGTGGATGT
GGTTATTGTCGATACGGCCGGACGCTTGCATAATAAGGTTAATTTAATGGAAGAATTGCGTAAAGTGAAACGAGTCATGG
AGCGGGAAATTCCAGGGGCACCTCATGAGGTGCTGCTGGTACTGGATGCAACAACAGGTCAGAATGCTCTCCAACAAGCG
AAACTTTTTCAGGAAGTGGCGGGGGTTACAGGGATTGTCCTAACGAAACTGGATGGGACAGCCAAAGGGGGCGTTGTGAT
CGGAATTCAAGGGGAGACCAGAATTCCTGTCAAATGGATCGGGATCGGAGAAGGTATGGAAGATTTACGTCCCTTTGTAC
CTGAGGATTTTGCAGCTGCACTATTTGGCAAGCAGGATAAGGAGGAGAGTTTCTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(21-83)

SRP54-type protein, GTPase domain (SRP54)

(102-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7WEC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.669

97.106

0.482

Multiple sequence alignment