Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   G7083_RS03545 Genome accession   NZ_CP049913
Coordinates   769315..769932 (+) Length   205 a.a.
NCBI ID   WP_166013617.1    Uniprot ID   A0A6G8D1Y1
Organism   Vibrio sp. HDW18     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 764315..774932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS03520 (G7083_03520) panC 764822..765703 (+) 882 WP_166013612.1 pantoate--beta-alanine ligase -
  G7083_RS03525 (G7083_03525) - 765783..766553 (-) 771 WP_166013613.1 ABC transporter permease -
  G7083_RS03530 (G7083_03530) - 766559..767476 (-) 918 WP_166013614.1 ABC transporter ATP-binding protein -
  G7083_RS03535 (G7083_03535) can 767730..768398 (+) 669 WP_166013615.1 carbonate dehydratase -
  G7083_RS03540 (G7083_03540) hpt 768469..769002 (-) 534 WP_166013616.1 hypoxanthine phosphoribosyltransferase -
  G7083_RS03545 (G7083_03545) hapR 769315..769932 (+) 618 WP_166013617.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  G7083_RS03550 (G7083_03550) rsmI 770025..770891 (-) 867 WP_166013618.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  G7083_RS03555 (G7083_03555) - 770957..772762 (+) 1806 WP_166014979.1 penicillin-binding protein activator -
  G7083_RS03560 (G7083_03560) - 772749..773117 (+) 369 WP_166013619.1 YraN family protein -
  G7083_RS03565 (G7083_03565) - 773121..773711 (+) 591 WP_166013620.1 phosphoheptose isomerase -
  G7083_RS03570 (G7083_03570) - 773714..774283 (+) 570 WP_166013621.1 BON domain-containing protein -
  G7083_RS03575 (G7083_03575) sspB 774400..774885 (-) 486 WP_166013622.1 ClpXP protease specificity-enhancing factor -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23745.50 Da        Isoelectric Point: 7.0936

>NTDB_id=428587 G7083_RS03545 WP_166013617.1 769315..769932(+) (hapR) [Vibrio sp. HDW18]
MDTSIEKPQRTRLAPHKRKLQLMEIALEVFAKRGIGRAGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVQQYSNFL
TDHIDLDLDVKSNLQSLCKQMVQLAITDCHWLKVLFEWSTSTREEVWPLFVATNRTNQLLIKNMFSKAMQRGELCEKHDV
DHITSLFHGIFYSLFLQINRVGAQDAMYKLVDSYLNMLCIYKTKV

Nucleotide


Download         Length: 618 bp        

>NTDB_id=428587 G7083_RS03545 WP_166013617.1 769315..769932(+) (hapR) [Vibrio sp. HDW18]
ATGGATACATCAATAGAAAAACCCCAGCGAACTCGCTTGGCCCCTCATAAACGTAAACTGCAACTGATGGAAATCGCCTT
AGAAGTGTTTGCAAAGCGTGGGATAGGCCGCGCAGGTCATGCTGACATTGCAGAAATTGCCCAGGTCTCGGTGGCAACCG
TATTTAATTACTTCCCGACTCGTGAAGATCTGGTGGATGACGTGCTCAATTTTGTGGTTCAGCAGTATTCGAATTTCCTC
ACCGATCACATCGATTTGGATTTAGATGTGAAAAGCAACCTACAAAGTTTATGCAAACAGATGGTGCAACTGGCAATCAC
CGATTGCCACTGGCTAAAAGTATTGTTTGAATGGAGTACATCAACCCGCGAGGAAGTGTGGCCGCTATTCGTTGCCACTA
ACCGAACGAATCAGTTGCTGATCAAAAATATGTTTAGCAAAGCGATGCAACGTGGTGAATTATGTGAAAAGCATGATGTT
GATCATATCACCAGCCTATTTCATGGCATCTTTTACTCACTGTTTCTGCAGATCAACCGCGTTGGTGCGCAAGATGCAAT
GTATAAACTGGTTGATAGCTATCTCAATATGCTATGCATCTATAAAACCAAGGTTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D1Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

85.222

99.024

0.844
  hapR Vibrio cholerae strain A1552

85.222

99.024

0.844
  opaR Vibrio parahaemolyticus RIMD 2210633

67.164

98.049

0.659