Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MYY_RS11320 Genome accession   NC_017769
Coordinates   2135322..2136419 (+) Length   365 a.a.
NCBI ID   WP_000266662.1    Uniprot ID   Q8DMX3
Organism   Streptococcus pneumoniae ST556     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2130322..2141419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYY_RS11295 (MYY_2145) pgsA 2130843..2131388 (-) 546 WP_000712136.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MYY_RS11300 (MYY_2146) rodZ 2131399..2132220 (-) 822 WP_001227958.1 cytoskeleton protein RodZ -
  MYY_RS11305 (MYY_2147) yfmH 2132262..2133545 (-) 1284 WP_000170193.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  MYY_RS11310 (MYY_2148) yfmF 2133542..2134792 (-) 1251 WP_000424257.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  MYY_RS11315 (MYY_2149) yaaA 2134951..2135319 (+) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  MYY_RS11320 (MYY_2150) recF 2135322..2136419 (+) 1098 WP_000266662.1 DNA replication/repair protein RecF Machinery gene
  MYY_RS11325 (MYY_2151) guaB 2136470..2137948 (-) 1479 WP_000073428.1 IMP dehydrogenase -
  MYY_RS11330 (MYY_2152) trpS 2138100..2139125 (-) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  MYY_RS11335 (MYY_2153) - 2139331..2140953 (+) 1623 WP_000958770.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41916.00 Da        Isoelectric Point: 9.0596

>NTDB_id=42858 MYY_RS11320 WP_000266662.1 2135322..2136419(+) (recF) [Streptococcus pneumoniae ST556]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=42858 MYY_RS11320 WP_000266662.1 2135322..2136419(+) (recF) [Streptococcus pneumoniae ST556]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DMX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

100

100

1
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46

Multiple sequence alignment