Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V753_RS14510 Genome accession   NZ_CP049904
Coordinates   2973047..2973691 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain GB03     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2968047..2978691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS14475 (V753_14445) - 2969232..2969663 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  V753_RS14480 (V753_14450) - 2969663..2970004 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  V753_RS14485 (V753_14455) - 2969997..2971478 (+) 1482 WP_029326018.1 Na+/H+ antiporter subunit D -
  V753_RS14490 (V753_14460) - 2971484..2971960 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  V753_RS14495 (V753_14465) - 2971960..2972244 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  V753_RS14500 (V753_14470) mnhG 2972228..2972602 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  V753_RS14505 (V753_14475) - 2972642..2973025 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  V753_RS14510 (V753_14480) comA 2973047..2973691 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  V753_RS14515 (V753_14485) comP 2973772..2976060 (-) 2289 WP_007613431.1 histidine kinase Regulator
  V753_RS14520 (V753_14490) comX 2976072..2976236 (-) 165 WP_007613432.1 competence pheromone ComX -
  V753_RS14525 (V753_14495) - 2976236..2977147 (-) 912 WP_007613433.1 polyprenyl synthetase family protein -
  V753_RS14530 (V753_14500) degQ 2977299..2977439 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  V753_RS14535 (V753_14505) - 2977905..2978246 (+) 342 WP_007613435.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=428520 V753_RS14510 WP_003152052.1 2973047..2973691(-) (comA) [Bacillus velezensis strain GB03]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=428520 V753_RS14510 WP_003152052.1 2973047..2973691(-) (comA) [Bacillus velezensis strain GB03]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864