Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   G7069_RS01195 Genome accession   NZ_CP049864
Coordinates   244498..245910 (+) Length   470 a.a.
NCBI ID   WP_166293449.1    Uniprot ID   -
Organism   Lysobacter sp. HDW10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 239498..250910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7069_RS01180 (G7069_01180) sucD 240613..241488 (-) 876 WP_166293443.1 succinate--CoA ligase subunit alpha -
  G7069_RS01185 (G7069_01185) sucC 241488..242657 (-) 1170 WP_166293445.1 ADP-forming succinate--CoA ligase subunit beta -
  G7069_RS01190 (G7069_01190) - 242831..244450 (+) 1620 WP_166293447.1 ATP-binding protein -
  G7069_RS01195 (G7069_01195) pilR 244498..245910 (+) 1413 WP_166293449.1 sigma-54 dependent transcriptional regulator Regulator
  G7069_RS10735 (G7069_01200) - 246230..246586 (+) 357 WP_166293451.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  G7069_RS10740 (G7069_01205) - 246703..247035 (+) 333 WP_166293453.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  G7069_RS01210 (G7069_01210) - 247109..248950 (+) 1842 WP_166293455.1 hypothetical protein -
  G7069_RS01215 (G7069_01215) - 248947..250077 (+) 1131 WP_166293457.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51377.05 Da        Isoelectric Point: 6.0008

>NTDB_id=428235 G7069_RS01195 WP_166293449.1 244498..245910(+) (pilR) [Lysobacter sp. HDW10]
MSEDRCALVVDDERDIRELLVLTLTRMGLRVETAATLGMAKSQLANAKFDFCLTDMRLPDGSGLELLSHIADKYPEMPVA
MLTAFGNVEAAVEALKLGAFDFVAKPVDLKVLRNLVQHALDLRTERKLAPKAPEPEKRMHGDSPAMAQLRQTIGKVARSQ
APVYILGESGAGKELAARSIHDHSPRADGPFVPVNCGAIPPELMESEFFGHKKGSFTGAHADKQGLFQAANGGSLFLDEV
AELPLSMQVKLLRAIQEKSVRPVGGQAEEGVDIRLISATHKDLSALVDEGKFRHDLYYRINVIELRVPPLRERVEDIGTL
TTMILAKLSERHQMPNTKISNEALDALHAYPFPGNVRELENILERAMTLSDGQAIYPEDLNLPKVAPPAVSVPTETAAPD
SPQERAFDAPIAPQSVGTPTGALPEALEQLEKQAIESALLENRYNKTKTAAQLGITFRALRYKLKKLGLD

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=428235 G7069_RS01195 WP_166293449.1 244498..245910(+) (pilR) [Lysobacter sp. HDW10]
ATGTCCGAAGACCGCTGTGCGCTAGTCGTTGATGACGAACGAGATATCCGGGAACTGCTGGTTCTGACGCTCACGCGCAT
GGGTTTGCGCGTGGAGACCGCAGCGACGCTCGGAATGGCCAAAAGCCAGCTGGCCAATGCGAAGTTCGATTTCTGCTTGA
CCGATATGCGCCTGCCGGACGGCTCCGGTTTGGAGCTGCTGTCGCACATTGCAGACAAATACCCCGAAATGCCGGTGGCC
ATGTTGACCGCCTTTGGCAATGTAGAGGCTGCGGTTGAAGCCCTTAAGCTTGGCGCCTTCGACTTCGTCGCCAAACCTGT
CGATTTGAAGGTGTTGCGCAATTTGGTGCAGCACGCGCTGGACCTGCGTACAGAACGCAAGCTCGCCCCCAAAGCCCCCG
AACCTGAAAAGCGCATGCACGGCGACTCGCCTGCCATGGCGCAATTGCGCCAAACGATTGGCAAAGTCGCGCGTAGTCAG
GCGCCTGTTTACATCTTGGGTGAATCCGGCGCCGGTAAAGAGCTGGCCGCACGCAGTATTCATGACCATTCCCCGCGCGC
GGATGGCCCCTTTGTGCCCGTCAACTGCGGCGCGATTCCGCCAGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAG
GCAGCTTCACCGGTGCCCACGCAGACAAACAAGGCCTGTTCCAAGCAGCTAATGGTGGCTCGTTGTTTTTAGATGAAGTT
GCCGAATTGCCGTTGTCGATGCAGGTGAAGTTGCTGCGAGCGATTCAAGAGAAATCGGTGCGTCCTGTTGGCGGCCAAGC
GGAAGAAGGCGTCGACATTCGGCTCATTTCGGCGACCCACAAGGATCTTTCTGCGCTGGTGGACGAAGGTAAATTTCGCC
ACGACTTGTATTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCTTTGCGTGAGCGCGTTGAAGATATCGGCACCTTG
ACCACAATGATCTTGGCCAAGTTGTCTGAGCGCCATCAGATGCCGAACACGAAGATCAGCAATGAAGCACTCGATGCATT
GCATGCCTACCCCTTCCCAGGCAATGTGCGTGAGCTGGAAAATATTCTTGAGCGCGCGATGACGCTTTCGGATGGTCAGG
CGATCTATCCGGAAGACCTCAACCTGCCAAAAGTGGCGCCTCCGGCTGTATCAGTGCCCACTGAGACAGCGGCGCCTGAC
TCGCCTCAAGAGCGCGCATTCGATGCACCTATCGCCCCGCAAAGCGTGGGAACGCCCACAGGGGCCCTGCCCGAGGCGCT
GGAGCAGCTCGAAAAGCAAGCCATTGAGAGCGCCCTACTGGAAAACCGCTATAACAAGACCAAGACAGCTGCGCAGCTGG
GTATCACCTTCCGCGCATTGCGTTACAAGCTTAAAAAGCTGGGTTTGGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-305)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.082

99.149

0.566
  pilR Acinetobacter baumannii strain A118

50

99.149

0.496