Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IF703_RS10520 Genome accession   NZ_CP062382
Coordinates   2098972..2100084 (-) Length   370 a.a.
NCBI ID   WP_064138165.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_068     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2093972..2105084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF703_RS10510 (IF703_10395) gyrA 2094331..2096991 (-) 2661 WP_000819095.1 DNA gyrase subunit A -
  IF703_RS10515 (IF703_10400) gyrB 2097028..2098962 (-) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  IF703_RS10520 (IF703_10405) recF 2098972..2100084 (-) 1113 WP_064138165.1 DNA replication/repair protein RecF Machinery gene
  IF703_RS10525 (IF703_10410) yaaA 2100081..2100326 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  IF703_RS10530 (IF703_10415) dnaN 2100707..2101840 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  IF703_RS10535 (IF703_10420) dnaA 2102118..2103479 (-) 1362 WP_001290436.1 chromosomal replication initiator protein DnaA -
  IF703_RS10540 (IF703_10425) rpmH 2104210..2104347 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  IF703_RS10545 (IF703_10430) rnpA 2104468..2104821 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42441.47 Da        Isoelectric Point: 6.3513

>NTDB_id=428230 IF703_RS10520 WP_064138165.1 2098972..2100084(-) (recF) [Staphylococcus aureus strain NAS_AN_068]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGYLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=428230 IF703_RS10520 WP_064138165.1 2098972..2100084(-) (recF) [Staphylococcus aureus strain NAS_AN_068]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCATTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGATACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.062

100

0.495