Detailed information NTG0428051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G8765_RS05800
• Genome accession: NZ_CP049828
• Coordinates: 1290069..1290938 (-)
• Length: 289 a.a.
• NCBI ID: WP_151092752.1
• Uniprot ID: -
• Organism: Janthinobacterium lividum strain EIF2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1285069..1295938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G8765_RS05760 (G8765_05765)	argJ	1285072..1286310 (+)	1239	WP_034784989.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
G8765_RS05765 (G8765_05770)	-	1286307..1287188 (+)	882	WP_176374737.1	ATP-binding protein	-
G8765_RS05770 (G8765_05775)	-	1287185..1287607 (+)	423	WP_070258873.1	NUDIX domain-containing protein	-
G8765_RS05775 (G8765_05780)	-	1287728..1287937 (+)	210	WP_034784992.1	hypothetical protein	-
G8765_RS05780 (G8765_05785)	-	1287941..1288357 (+)	417	WP_176374738.1	VapC toxin family PIN domain ribonuclease	-
G8765_RS05785 (G8765_05790)	yacG	1288361..1288552 (-)	192	WP_034785391.1	DNA gyrase inhibitor YacG	-
G8765_RS05790 (G8765_05795)	zapD	1288571..1289326 (-)	756	WP_034748811.1	cell division protein ZapD	-
G8765_RS05795 (G8765_05800)	coaE	1289389..1290036 (-)	648	WP_176374739.1	dephospho-CoA kinase	-
G8765_RS05800 (G8765_05805)	pilD	1290069..1290938 (-)	870	WP_151092752.1	A24 family peptidase	Machinery gene
G8765_RS05805 (G8765_05810)	-	1291041..1292237 (-)	1197	WP_176381908.1	type II secretion system F family protein	-
G8765_RS05810 (G8765_05815)	-	1292311..1293783 (-)	1473	WP_244965394.1	DHA2 family efflux MFS transporter permease subunit	-
G8765_RS05815 (G8765_05820)	-	1293990..1295144 (+)	1155	WP_176374742.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30964.80 Da
• Isoelectric Point: 7.3207

>NTDB_id=428051 G8765_RS05800 WP_151092752.1 1290069..1290938(-) (pilD) [Janthinobacterium lividum strain EIF2]
MLQDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRVPKMMQRESDNYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVISYLLLRGKCSACQAPISVRYPLVELLTGALSALLVWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLQDAVIGAAAGYLALWGVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSLV
GAVVGIGLIVFAKRGRDKPIPFGPYLAAAGLIALLYGTPLSRLTLGLIG

Nucleotide

• Length: 870 bp

>NTDB_id=428051 G8765_RS05800 WP_151092752.1 1290069..1290938(-) (pilD) [Janthinobacterium lividum strain EIF2]
ATGCTGCAAGATACCCTGCTGTTCGCCGCGCCCGGCAACCTGCCCGTCGCCCTCGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGCTTCCTCAACGTGGTGATCCACCGCGTGCCGAAAATGATGCAGCGCGAATCCGATAATTACGTGGCGGAAGAAA
GCGGCTTGCCCTTGCCGCACACGGACCGCTATAACCTGATGCTGCCGCACTCGAACTGCACCGCTTGCGGCCACCGCATC
ACGGCCATGGAAAACATCCCCGTCATCAGTTACCTGCTGCTGCGCGGCAAATGCAGCGCCTGCCAGGCGCCGATCTCCGT
GCGCTATCCGCTGGTCGAATTGCTGACGGGCGCCCTGTCGGCCCTCTTGGTCTGGCACTTCGGCAGCGGCTGGACGGGTC
TCGCCACGCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATCGACGCAGATACGCAAATGCTGCCCGACGATCTC
ACCTTTCCCCTGCTGTGGGCTGGCCTGCTGGTCAATATCAATGGCACCTTCGTGCCCCTGCAAGACGCCGTCATCGGCGC
GGCCGCCGGCTACCTGGCCCTGTGGGGCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTCGGTGCGTGGCTGGGCTGGACGATGCTGCCGACGATCATCTTATTGTCATCGCTGGTC
GGCGCCGTGGTCGGCATCGGGCTGATCGTGTTTGCCAAGCGCGGGCGCGACAAACCGATTCCGTTCGGCCCCTACCTGGC
TGCGGCGGGCCTGATCGCCTTGCTGTACGGCACGCCCCTGTCCCGCCTCACGCTGGGCCTGATTGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.797	95.502	0.533
pilD	Vibrio campbellii strain DS40M4	56.489	90.657	0.512
pilD	Acinetobacter baumannii D1279779	48.443	100	0.484
pilD	Neisseria gonorrhoeae MS11	53.516	88.581	0.474
pilD	Acinetobacter nosocomialis M2	47.405	100	0.474