Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   G4D76_RS08020 Genome accession   NZ_CP049818
Coordinates   1369604..1370137 (-) Length   177 a.a.
NCBI ID   WP_026859420.1    Uniprot ID   -
Organism   Jeotgalicoccus sp. WY2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1364604..1375137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D76_RS15955 - 1364832..1365173 (-) 342 WP_213809615.1 FAD-dependent oxidoreductase -
  G4D76_RS07990 - 1365578..1365853 (+) 276 WP_250129849.1 hypothetical protein -
  G4D76_RS07995 rpsR 1365986..1366225 (-) 240 Protein_1688 30S ribosomal protein S18 -
  G4D76_RS08000 - 1366376..1366561 (-) 186 Protein_1689 PadR family transcriptional regulator -
  G4D76_RS08005 modB 1366917..1367577 (-) 661 Protein_1690 molybdate ABC transporter permease subunit -
  G4D76_RS08010 modA 1367620..1368372 (-) 753 WP_250129850.1 molybdate ABC transporter substrate-binding protein -
  G4D76_RS08015 modA 1368481..1369380 (-) 900 WP_213809616.1 molybdate ABC transporter substrate-binding protein -
  G4D76_RS08020 ssbA 1369604..1370137 (-) 534 WP_026859420.1 single-stranded DNA-binding protein Machinery gene
  G4D76_RS08025 rpsF 1370164..1370466 (-) 303 WP_026859419.1 30S ribosomal protein S6 -
  G4D76_RS08030 ychF 1370923..1372023 (-) 1101 WP_026859418.1 redox-regulated ATPase YchF -
  G4D76_RS08035 - 1372037..1372222 (-) 186 WP_026859417.1 DUF951 domain-containing protein -
  G4D76_RS08040 - 1372229..1373155 (-) 927 WP_213809617.1 mechanosensitive ion channel family protein -
  G4D76_RS08045 - 1373174..1373947 (-) 774 WP_213809618.1 ParB/RepB/Spo0J family partition protein -
  G4D76_RS08050 - 1374044..1374856 (-) 813 WP_026859416.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19447.09 Da        Isoelectric Point: 4.9626

>NTDB_id=428027 G4D76_RS08020 WP_026859420.1 1369604..1370137(-) (ssbA) [Jeotgalicoccus sp. WY2]
MLNRVVLVGRLTRDPELRVSQSNVAVATFNLAVNRPFTSANGERGADFINCVVFRKQAENVNQYVKKGSLVGIDGRIQTR
NYENKDGQRVYVTEVVCESVQFLEPKGSGNQSQGNNNDYNSADSYQSAYGGNQSTGNQSSGNQSTGRSQQQRQDNVEENP
FANSKGPVDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=428027 G4D76_RS08020 WP_026859420.1 1369604..1370137(-) (ssbA) [Jeotgalicoccus sp. WY2]
ATGCTAAACCGTGTAGTTTTAGTTGGTCGCTTAACAAGAGACCCTGAACTTAGAGTCAGTCAAAGCAATGTTGCTGTCGC
TACTTTCAACTTAGCTGTGAACCGTCCTTTTACTAGTGCAAACGGTGAGAGAGGCGCTGACTTTATCAACTGTGTTGTTT
TCCGCAAACAGGCAGAAAATGTTAACCAGTATGTTAAAAAAGGCAGCTTAGTTGGTATCGATGGTAGAATTCAAACTCGT
AACTACGAGAATAAAGACGGGCAAAGAGTATATGTAACTGAAGTCGTGTGTGAAAGTGTTCAGTTCTTAGAGCCGAAAGG
CAGCGGTAATCAATCTCAAGGCAATAATAATGATTATAACTCTGCTGACTCTTACCAAAGTGCATACGGCGGCAATCAGT
CGACTGGTAACCAGTCATCTGGGAATCAATCAACTGGACGCAGCCAGCAACAGCGTCAGGATAACGTAGAGGAAAATCCA
TTTGCGAACTCTAAAGGTCCAGTAGACATCAGCGATGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.322

100

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

55

100

0.559