Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   G8E09_RS17780 Genome accession   NZ_CP049806
Coordinates   3762376..3762702 (-) Length   108 a.a.
NCBI ID   WP_068564720.1    Uniprot ID   A0A1C2PMY6
Organism   Acinetobacter pittii strain A1254     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3757376..3767702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS17760 (G8E09_17750) - 3757483..3758109 (-) 627 WP_016142421.1 FHA domain-containing protein -
  G8E09_RS17765 (G8E09_17755) gspD 3758150..3760420 (-) 2271 WP_167564200.1 type II secretion system secretin GspD -
  G8E09_RS17770 (G8E09_17760) - 3760462..3761298 (-) 837 WP_005079413.1 type II secretion system protein N -
  G8E09_RS17775 (G8E09_17765) gspN 3761298..3762041 (-) 744 WP_167564201.1 type II secretion system protein N -
  G8E09_RS17780 (G8E09_17770) hns 3762376..3762702 (-) 327 WP_068564720.1 H-NS family nucleoid-associated regulatory protein Regulator
  G8E09_RS17785 (G8E09_17775) - 3762897..3763337 (-) 441 WP_214286921.1 acyl-CoA thioesterase -
  G8E09_RS17790 (G8E09_17780) - 3763345..3764538 (-) 1194 WP_197738951.1 heme biosynthesis protein HemY -
  G8E09_RS17795 (G8E09_17785) - 3764548..3765390 (-) 843 WP_086611622.1 hypothetical protein -
  G8E09_RS17800 (G8E09_17790) hemD 3765399..3766166 (-) 768 WP_086611623.1 uroporphyrinogen-III synthase -
  G8E09_RS17805 (G8E09_17795) hemC 3766170..3767087 (-) 918 WP_032037675.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12492.15 Da        Isoelectric Point: 5.0524

>NTDB_id=428002 G8E09_RS17780 WP_068564720.1 3762376..3762702(-) (hns) [Acinetobacter pittii strain A1254]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNTE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=428002 G8E09_RS17780 WP_068564720.1 3762376..3762702(-) (hns) [Acinetobacter pittii strain A1254]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATACTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2PMY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991