Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G8E09_RS02110 Genome accession   NZ_CP049806
Coordinates   445357..445986 (-) Length   209 a.a.
NCBI ID   WP_167562997.1    Uniprot ID   A0A6H0FQK7
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440357..450986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS02075 (G8E09_02075) mlaE 440690..441466 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  G8E09_RS02080 (G8E09_02080) - 441466..442146 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  G8E09_RS02085 (G8E09_02085) - 442173..442814 (+) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  G8E09_RS02090 (G8E09_02090) - 442826..443113 (+) 288 WP_005078357.1 STAS domain-containing protein -
  G8E09_RS02095 (G8E09_02095) - 443186..444199 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  G8E09_RS02100 (G8E09_02100) - 444358..444939 (+) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  G8E09_RS02105 (G8E09_02105) mutT 444954..445355 (+) 402 WP_167562996.1 NUDIX hydrolase -
  G8E09_RS02110 (G8E09_02110) comF 445357..445986 (-) 630 WP_167562997.1 ComF family protein Machinery gene
  G8E09_RS02115 (G8E09_02115) recG 445979..448024 (-) 2046 WP_167562998.1 ATP-dependent DNA helicase RecG -
  G8E09_RS02120 (G8E09_02120) - 448045..448860 (+) 816 WP_167562999.1 NAD-dependent epimerase/dehydratase family protein -
  G8E09_RS02125 (G8E09_02125) - 448940..449923 (+) 984 WP_025466709.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24448.66 Da        Isoelectric Point: 9.9490

>NTDB_id=427977 G8E09_RS02110 WP_167562997.1 445357..445986(-) (comF) [Acinetobacter pittii strain A1254]
MFNFLNFQPLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLVLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATLKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=427977 G8E09_RS02110 WP_167562997.1 445357..445986(-) (comF) [Acinetobacter pittii strain A1254]
ATGTTTAATTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAATTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAAGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCCTTAGTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAACACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCGGCAACACTAAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0FQK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.951

98.565

0.837
  comF Acinetobacter baumannii D1279779

83.981

98.565

0.828