Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   G9P47_RS12200 Genome accession   NZ_CP049802
Coordinates   1439817..1440257 (+) Length   146 a.a.
NCBI ID   WP_015364970.1    Uniprot ID   -
Organism   Staphylococcus warneri strain Cap 100.1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1434817..1445257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P47_RS07100 (G9P47_07120) - 1435313..1435516 (+) 204 WP_002451885.1 YqgQ family protein -
  G9P47_RS07105 (G9P47_07125) - 1435513..1436499 (+) 987 WP_002465775.1 ROK family glucokinase -
  G9P47_RS07110 (G9P47_07130) - 1436499..1436822 (+) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  G9P47_RS07115 (G9P47_07135) - 1436826..1437449 (+) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  G9P47_RS07120 (G9P47_07140) comGA 1437496..1438470 (+) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  G9P47_RS07125 (G9P47_07145) comGB 1438442..1439509 (+) 1068 WP_002465743.1 competence type IV pilus assembly protein ComGB -
  G9P47_RS07130 (G9P47_07150) comGC 1439522..1439839 (+) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  G9P47_RS12200 comGD 1439817..1440257 (+) 441 WP_015364970.1 competence type IV pilus minor pilin ComGD Machinery gene
  G9P47_RS07135 (G9P47_07155) - 1440455..1440952 (+) 498 WP_002465737.1 competence type IV pilus minor pilin ComGF -
  G9P47_RS07140 (G9P47_07160) - 1441111..1441629 (+) 519 WP_037539765.1 shikimate kinase -
  G9P47_RS07145 (G9P47_07165) gcvT 1441801..1442892 (+) 1092 WP_002465750.1 glycine cleavage system aminomethyltransferase GcvT -
  G9P47_RS07150 (G9P47_07170) gcvPA 1442911..1444260 (+) 1350 WP_235065678.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17009.34 Da        Isoelectric Point: 10.5759

>NTDB_id=427962 G9P47_RS12200 WP_015364970.1 1439817..1440257(+) (comGD) [Staphylococcus warneri strain Cap 100.1]
MAKRLQIKAYNYIEILMVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEEHGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=427962 G9P47_RS12200 WP_015364970.1 1439817..1440257(+) (comGD) [Staphylococcus warneri strain Cap 100.1]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATATTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

48.993

100

0.5
  comGD Staphylococcus aureus N315

48.993

100

0.5