Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G9P47_RS08495 Genome accession   NZ_CP049802
Coordinates   1755887..1756762 (-) Length   291 a.a.
NCBI ID   WP_412766198.1    Uniprot ID   -
Organism   Staphylococcus warneri strain Cap 100.1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1750887..1761762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P47_RS08480 (G9P47_08495) xerC 1751152..1752045 (-) 894 WP_002466041.1 tyrosine recombinase XerC -
  G9P47_RS08485 (G9P47_08500) trmFO 1752210..1753517 (-) 1308 WP_002466058.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  G9P47_RS08490 (G9P47_08505) topA 1753634..1755709 (-) 2076 WP_026088907.1 type I DNA topoisomerase -
  G9P47_RS08495 (G9P47_08510) dprA 1755887..1756762 (-) 876 WP_412766198.1 DNA-processing protein DprA Machinery gene
  G9P47_RS08500 (G9P47_08515) sucD 1756997..1757902 (-) 906 WP_002466045.1 succinate--CoA ligase subunit alpha -
  G9P47_RS08505 (G9P47_08520) sucC 1757924..1759090 (-) 1167 WP_002466034.1 ADP-forming succinate--CoA ligase subunit beta -
  G9P47_RS08510 (G9P47_08525) - 1759198..1759968 (-) 771 WP_002466053.1 ribonuclease HII -
  G9P47_RS08515 (G9P47_08530) ylqF 1759961..1760836 (-) 876 WP_002466050.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33894.99 Da        Isoelectric Point: 8.6868

>NTDB_id=427953 G9P47_RS08495 WP_412766198.1 1755887..1756762(-) (dprA) [Staphylococcus warneri strain Cap 100.1]
MNLNENFLPKLYWSHFTTSQIHQFYRYNPHIFQMTSNEQEISLLYWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKY
ITFFDEDYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIISGLAEGADSEAH
IQALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPEKNRIISGLSKGVLLTESNERSGSR
ITVDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN

Nucleotide


Download         Length: 876 bp        

>NTDB_id=427953 G9P47_RS08495 WP_412766198.1 1755887..1756762(-) (dprA) [Staphylococcus warneri strain Cap 100.1]
ATGAATTTGAACGAAAACTTTTTACCTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTA
CAACCCTCATATTTTCCAAATGACTTCTAATGAACAAGAAATTTCATTATTATATTGGATTACTCAACATCATCCTACGC
TTTTATCAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATAT
ATCACTTTTTTCGACGAAGATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGA
TAAGAAATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTAC
AATATCTTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTCTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACAC
ATACAAGCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGT
TTCATTAAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGT
TTCCAGAAAAAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGA
ATCACAGTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGG
AAATCTATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

55.282

97.595

0.54
  dprA Staphylococcus aureus MW2

55.282

97.595

0.54