Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G9P47_RS04760 Genome accession   NZ_CP049802
Coordinates   986668..987051 (+) Length   127 a.a.
NCBI ID   WP_002466750.1    Uniprot ID   -
Organism   Staphylococcus warneri strain Cap 100.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 985780..986037 986668..987051 flank 631


Gene organization within MGE regions


Location: 985780..987051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P47_RS04755 (G9P47_04780) - 986040..986480 (-) 441 WP_002466783.1 YwpF-like family protein -
  G9P47_RS04760 (G9P47_04785) ssb 986668..987051 (+) 384 WP_002466750.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14533.42 Da        Isoelectric Point: 6.4556

>NTDB_id=427937 G9P47_RS04760 WP_002466750.1 986668..987051(+) (ssb) [Staphylococcus warneri strain Cap 100.1]
MLNKIVLVGRLTKDAQIFEKEEGSKVATFCVATERNYKDQNNEIACDYLYCKAFGKTATNIEMYTSQGSLVGITGQMRSR
KYEKDNQTHFVTEVYVETIKFMSSKTKESNILSNEFNEAQNECFHIG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=427937 G9P47_RS04760 WP_002466750.1 986668..987051(+) (ssb) [Staphylococcus warneri strain Cap 100.1]
ATGTTAAATAAAATAGTTTTAGTTGGCAGACTTACAAAGGATGCCCAAATTTTTGAAAAGGAGGAAGGTAGTAAAGTAGC
AACATTTTGCGTTGCTACGGAAAGAAATTATAAAGATCAGAACAATGAAATCGCATGCGATTACCTATATTGTAAAGCTT
TTGGTAAAACAGCTACGAATATCGAAATGTATACATCACAGGGTTCTTTAGTGGGTATTACAGGTCAAATGCGATCTCGT
AAGTATGAAAAAGATAATCAGACACATTTTGTAACTGAAGTATATGTAGAAACAATTAAATTTATGTCCTCTAAGACAAA
AGAATCCAATATCCTCTCTAACGAATTTAATGAAGCACAAAATGAATGCTTTCATATAGGTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

78.07

89.764

0.701
  ssb Staphylococcus aureus MW2

77.193

89.764

0.693