Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G8E00_RS02015 Genome accession   NZ_CP049801
Coordinates   449191..449823 (-) Length   210 a.a.
NCBI ID   WP_166008634.1    Uniprot ID   A0A6G8RSC1
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444191..454823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS01980 (G8E00_01980) mlaE 444430..445209 (+) 780 WP_166008641.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  G8E00_RS01985 (G8E00_01985) - 445209..445892 (+) 684 WP_166221650.1 outer membrane lipid asymmetry maintenance protein MlaD -
  G8E00_RS01990 (G8E00_01990) - 445911..446546 (+) 636 WP_166008639.1 phospholipid-binding protein MlaC -
  G8E00_RS01995 (G8E00_01995) - 446569..446856 (+) 288 WP_166221652.1 STAS domain-containing protein -
  G8E00_RS02000 (G8E00_02000) - 446973..447986 (-) 1014 WP_166008637.1 CorA family divalent cation transporter -
  G8E00_RS02005 (G8E00_02005) - 448146..448745 (+) 600 WP_166221654.1 TIGR00730 family Rossman fold protein -
  G8E00_RS02010 (G8E00_02010) - 448742..449146 (+) 405 WP_166221656.1 NUDIX domain-containing protein -
  G8E00_RS02015 (G8E00_02015) comF 449191..449823 (-) 633 WP_166008634.1 ComF family protein Machinery gene
  G8E00_RS02020 (G8E00_02020) recG 449952..451997 (-) 2046 WP_166221658.1 ATP-dependent DNA helicase RecG -
  G8E00_RS02025 (G8E00_02025) - 452043..452801 (+) 759 WP_166221661.1 NAD(P)H-binding protein -
  G8E00_RS02030 (G8E00_02030) - 453066..453935 (+) 870 WP_166226357.1 IS982 family transposase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24773.23 Da        Isoelectric Point: 9.6306

>NTDB_id=427902 G8E00_RS02015 WP_166008634.1 449191..449823(-) (comF) [Acinetobacter shaoyimingii strain 323-1]
MFNLVNHLLHRSIQRISPCLLCGLDTQQAHSFCTDCWQQLPWFKDQIIRHEQSIGVVFHYEFPVDRIIQKYKYEQQLQYQ
IFLMHSLMQLKLGKIDAIVPMPISTERLKERGYNQMLVIAKLLSKQLKIPVWQPVIRLAQHSQKGLTRVERLENIENQFQ
IMRLERRKYRRVLMIDDVVTTGSSIFALKQALEKLGCKHIEMACIAAAEQ

Nucleotide


Download         Length: 633 bp        

>NTDB_id=427902 G8E00_RS02015 WP_166008634.1 449191..449823(-) (comF) [Acinetobacter shaoyimingii strain 323-1]
ATGTTCAATTTAGTCAATCATCTTCTGCATCGCAGTATTCAACGTATTTCGCCCTGTCTTTTGTGTGGATTAGATACACA
ACAAGCTCATTCGTTTTGTACTGATTGCTGGCAACAACTTCCATGGTTTAAAGATCAAATTATTCGGCATGAACAATCTA
TTGGTGTCGTATTTCATTATGAATTTCCTGTCGATCGAATCATTCAAAAATACAAATACGAACAGCAACTACAATATCAA
ATCTTCTTGATGCATAGCTTAATGCAACTCAAATTGGGGAAAATTGATGCCATTGTTCCCATGCCCATTTCGACTGAACG
ATTAAAAGAGCGTGGCTATAACCAAATGTTGGTCATTGCAAAATTATTATCGAAACAGCTCAAAATTCCTGTTTGGCAAC
CTGTTATTCGTTTAGCACAACATTCGCAAAAAGGCTTAACTCGGGTGGAGCGTCTGGAAAATATCGAAAATCAATTTCAA
ATCATGCGTCTTGAACGACGAAAGTATCGGCGGGTATTAATGATTGATGATGTGGTCACGACAGGAAGTTCAATTTTTGC
CTTAAAGCAAGCTTTAGAGAAATTGGGTTGTAAACACATTGAAATGGCGTGTATTGCAGCGGCAGAACAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8RSC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.852

99.524

0.586
  comF Acinetobacter baumannii D1279779

58.373

99.524

0.581