Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   MYY_RS02995 Genome accession   NC_017769
Coordinates   565693..566742 (+) Length   349 a.a.
NCBI ID   WP_000653752.1    Uniprot ID   -
Organism   Streptococcus pneumoniae ST556     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 560693..571742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYY_RS02965 (MYY_0578) - 561818..562171 (+) 354 WP_000115730.1 hypothetical protein -
  MYY_RS02970 (MYY_0579) dnaJ 562376..563512 (+) 1137 WP_001066299.1 molecular chaperone DnaJ -
  MYY_RS02975 (MYY_0580) - 563834..564028 (-) 195 WP_001808905.1 hypothetical protein -
  MYY_RS02980 (MYY_0581) - 564190..564477 (-) 288 WP_000777760.1 hypothetical protein -
  MYY_RS02985 (MYY_0582) - 564487..564897 (-) 411 WP_001278301.1 HIT family protein -
  MYY_RS02990 (MYY_0583) pptA 564965..565696 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  MYY_RS02995 (MYY_0584) pptB 565693..566742 (+) 1050 WP_000653752.1 ABC transporter permease Regulator
  MYY_RS03000 (MYY_0585) - 566910..567239 (-) 330 WP_000132575.1 hypothetical protein -
  MYY_RS03005 (MYY_02575) - 567515..567853 (+) 339 WP_000682122.1 LytTR family DNA-binding domain-containing protein -
  MYY_RS03010 (MYY_0587) comE/blpR 567858..568595 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  MYY_RS03015 (MYY_0588) - 568608..569948 (+) 1341 WP_000275284.1 sensor histidine kinase -
  MYY_RS03020 (MYY_0589) - 570188..571534 (-) 1347 WP_001814919.1 IS1380-like element ISSpn5 family transposase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40652.84 Da        Isoelectric Point: 9.9405

>NTDB_id=42771 MYY_RS02995 WP_000653752.1 565693..566742(+) (pptB) [Streptococcus pneumoniae ST556]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLVMGYGLPVFLVYVLLLGVGKYFLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKVVQKVSGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLISFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=42771 MYY_RS02995 WP_000653752.1 565693..566742(+) (pptB) [Streptococcus pneumoniae ST556]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTTCAGACCCTCTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGTCATGGGTTATGGCTTGCCTGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATTCTAAAGGTTGTTCAGAAGGTGTCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATTTGCGAAATGGAGACCTTTTTGCCCTTAGTCTCCGTCTGCTCTTGCTTTCT
TTGCTGGCGCAGGTCTTTATCGAGCAATCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTTTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGATCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467


Multiple sequence alignment