Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   G7038_RS00335 Genome accession   NZ_CP049756
Coordinates   73549..74094 (-) Length   181 a.a.
NCBI ID   WP_104227653.1    Uniprot ID   -
Organism   Pasteurella multocida strain KVNON-213     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 68549..79094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7038_RS00315 - 69412..70023 (-) 612 WP_083004649.1 YfgM family protein -
  G7038_RS00320 hisS 70042..71313 (-) 1272 WP_104227651.1 histidine--tRNA ligase -
  G7038_RS00325 ispG 71343..72446 (-) 1104 WP_005719572.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  G7038_RS00330 - 72473..73426 (-) 954 WP_104227652.1 RodZ family helix-turn-helix domain-containing protein -
  G7038_RS00335 pilF/pilF2 73549..74094 (-) 546 WP_104227653.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  G7038_RS00340 - 74134..75318 (-) 1185 WP_083004640.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  G7038_RS00345 - 75497..76750 (-) 1254 WP_005725114.1 AI-2E family transporter -
  G7038_RS00350 glnB 76751..77089 (-) 339 WP_005725112.1 nitrogen regulatory protein P-II -
  G7038_RS00355 mog 77134..77712 (-) 579 WP_165544552.1 molybdopterin adenylyltransferase -
  G7038_RS00360 - 77738..78667 (-) 930 WP_059245741.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20847.43 Da        Isoelectric Point: 7.9056

>NTDB_id=427670 G7038_RS00335 WP_104227653.1 73549..74094(-) (pilF/pilF2) [Pasteurella multocida strain KVNON-213]
MTRVFQLGIASIFSLFLSACVSQEGHKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGTFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFVKDAVRYQQ
NLQHLTQFDPNRAKKFPPHIE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=427670 G7038_RS00335 WP_104227653.1 73549..74094(-) (pilF/pilF2) [Pasteurella multocida strain KVNON-213]
ATGACGCGCGTTTTTCAATTAGGGATAGCAAGCATTTTTTCTCTTTTTCTTTCTGCCTGTGTGAGTCAAGAAGGTCACAA
AACGTTTGATTCACATGAGGCGGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGTGATGTATTAAA
TAATTATGGTACCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAGCACGCCGATACTTATGAAAATTTGGTTTGGTGTGCGTCTTTTGTCAAAGATGCTGTCCGTTATCAACAA
AATTTGCAACACTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

52.096

92.265

0.481
  pilF Glaesserella parasuis strain SC1401

44.385

100

0.459