Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DER53_RS02535 Genome accession   NZ_CP049703
Coordinates   474588..475535 (-) Length   315 a.a.
NCBI ID   WP_003248209.1    Uniprot ID   A0A6G9IZJ5
Organism   Parageobacillus toebii NBRC 107807 strain DSM 14590     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469588..480535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DER53_RS02510 (DER53_02510) bioD 470288..471007 (-) 720 WP_062755785.1 dethiobiotin synthase -
  DER53_RS02515 (DER53_02515) - 471007..471570 (-) 564 WP_062755783.1 biotin transporter BioY -
  DER53_RS02520 (DER53_02520) - 471814..472770 (-) 957 WP_062755781.1 siderophore ABC transporter substrate-binding protein -
  DER53_RS02525 (DER53_02525) - 472893..473651 (-) 759 WP_013400053.1 ABC transporter ATP-binding protein -
  DER53_RS02530 (DER53_02530) - 473645..474595 (-) 951 WP_062678356.1 iron chelate uptake ABC transporter family permease subunit -
  DER53_RS02535 (DER53_02535) ceuB 474588..475535 (-) 948 WP_003248209.1 ABC transporter permease Machinery gene
  DER53_RS02540 (DER53_02540) - 475990..476556 (+) 567 WP_062755779.1 FAD-dependent oxidoreductase -
  DER53_RS02545 (DER53_02545) - 476920..477153 (-) 234 Protein_487 alcohol dehydrogenase -
  DER53_RS02550 (DER53_02550) katA 477666..479132 (+) 1467 WP_062755775.1 catalase KatA -
  DER53_RS02555 (DER53_02555) - 479260..479541 (-) 282 WP_062755773.1 hypothetical protein -
  DER53_RS02560 (DER53_02560) - 480007..480252 (-) 246 WP_062755769.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34567.84 Da        Isoelectric Point: 9.6176

>NTDB_id=427294 DER53_RS02535 WP_003248209.1 474588..475535(-) (ceuB) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
MKKLFILFVILAVASLFIGVQHISLADLLMLKADDVEVLIISRIPRLISIIIAGASMSICGLIMQQLSQNKFVSPTTAGT
MDCARLGILVSLILFASAGPLLKVTVAFLFAFAGTMIFMRILEKVKYKDAIFIPLVGLMFGNIISSMTTFFAYKYNLIQS
ISSWLHGDFSMIIKGRYELLYLSVPLMIVAYMYANRFTIAGMGEEIATNLGLHYRSIVNVGLIIVAATSSVVVLTVGTLP
FLGLIIPNLVTLYYGDHLEKVLPLTALSGAIFVLACDIFGRVVIYPYEIPIGLTVGVIGSGVFLYLLVRRRKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=427294 DER53_RS02535 WP_003248209.1 474588..475535(-) (ceuB) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
ATGAAAAAGCTGTTTATATTATTCGTCATATTAGCAGTTGCATCTTTATTTATCGGTGTCCAGCATATTTCGCTTGCCGA
TTTGCTGATGTTGAAAGCGGATGACGTAGAAGTATTAATAATCAGCCGGATTCCGCGGTTGATCAGCATTATTATTGCGG
GTGCCAGCATGAGTATTTGCGGGCTAATTATGCAGCAGTTAAGCCAAAATAAGTTTGTCTCGCCAACGACGGCGGGGACG
ATGGATTGTGCAAGGTTAGGAATTTTAGTGTCATTGATTTTGTTCGCTTCCGCAGGTCCGCTGCTGAAAGTTACGGTCGC
ATTTTTATTCGCTTTTGCCGGTACGATGATTTTTATGAGAATACTTGAAAAAGTGAAATATAAAGACGCCATTTTTATTC
CGCTTGTCGGTTTAATGTTTGGCAATATCATCAGTTCCATGACAACATTTTTCGCGTATAAGTACAATTTAATCCAATCC
ATTTCGTCATGGCTGCATGGCGATTTTTCCATGATTATAAAAGGGCGGTATGAACTGCTTTACTTAAGTGTTCCGCTTAT
GATTGTCGCTTATATGTATGCGAACCGTTTTACGATAGCAGGAATGGGAGAAGAAATCGCGACAAATTTAGGCCTTCATT
ATCGGTCCATCGTCAATGTCGGATTAATCATCGTGGCTGCTACTTCTTCTGTTGTGGTGCTGACGGTCGGGACACTGCCG
TTTTTAGGATTGATTATTCCAAACCTTGTCACATTATATTATGGAGATCATTTAGAGAAAGTCCTGCCTCTGACGGCATT
GTCAGGAGCAATTTTCGTGTTGGCTTGCGATATTTTCGGGCGCGTCGTTATTTATCCGTATGAAATCCCGATCGGTTTGA
CGGTAGGAGTCATTGGCAGCGGCGTATTTTTGTATTTGTTAGTAAGGAGAAGAAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9IZJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.984

98.73

0.543