Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SMULJ23_RS07100 Genome accession   NC_017768
Coordinates   1471701..1472300 (-) Length   199 a.a.
NCBI ID   WP_002263250.1    Uniprot ID   Q8DV99
Organism   Streptococcus mutans LJ23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1466701..1477300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS07080 (SMULJ23_1383) murF 1466969..1468327 (-) 1359 WP_002295383.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SMULJ23_RS07085 (SMULJ23_1384) - 1468396..1469355 (-) 960 WP_014678142.1 bile acid:sodium symporter family protein -
  SMULJ23_RS07090 (SMULJ23_1385) - 1469708..1470268 (+) 561 WP_002263248.1 folate family ECF transporter S component -
  SMULJ23_RS07095 (SMULJ23_1386) - 1470440..1471489 (-) 1050 WP_002263249.1 D-alanine--D-alanine ligase -
  SMULJ23_RS07100 (SMULJ23_1387) recR 1471701..1472300 (-) 600 WP_002263250.1 recombination mediator RecR Machinery gene
  SMULJ23_RS07105 (SMULJ23_1388) pbp2b 1472310..1474388 (-) 2079 WP_002263251.1 penicillin-binding protein PBP2B -
  SMULJ23_RS07110 (SMULJ23_1389) - 1474635..1475327 (-) 693 WP_002263252.1 phosphoglycerate mutase -
  SMULJ23_RS07115 (SMULJ23_1390) - 1475545..1476480 (+) 936 WP_014678143.1 dihydroorotate oxidase -
  SMULJ23_RS10660 (SMULJ23_1391) - 1476543..1476698 (-) 156 WP_002263254.1 hypothetical protein -
  SMULJ23_RS07125 (SMULJ23_1392) - 1476762..1477238 (-) 477 WP_002263255.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21818.89 Da        Isoelectric Point: 4.6800

>NTDB_id=42712 SMULJ23_RS07100 WP_002263250.1 1471701..1472300(-) (recR) [Streptococcus mutans LJ23]
MLYPTPIAKLIESFTKLPGIGIKTATRLAFYTIGMSDEDVNNFAKNLLAAKRELTYCSVCGNLTDDDPCNICTDESRDRS
TVLVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGIGPDDINLKSLLTRLRDNSDIHEVIIATNATADGEATAMYISRV
LKPAGITVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 600 bp        

>NTDB_id=42712 SMULJ23_RS07100 WP_002263250.1 1471701..1472300(-) (recR) [Streptococcus mutans LJ23]
ATGCTCTACCCAACGCCTATTGCCAAACTTATTGAGAGTTTCACAAAATTACCGGGTATTGGTATCAAAACAGCGACTCG
CTTAGCTTTTTATACGATTGGTATGAGTGATGAAGACGTTAATAACTTTGCTAAAAATCTTCTAGCTGCTAAACGAGAAT
TGACCTACTGTTCTGTTTGTGGCAATCTGACAGATGATGATCCTTGCAATATTTGTACAGATGAAAGCAGAGACCGCTCG
ACTGTTTTAGTAGTTGAAGATAGTAAGGATGTTTCTGCAATGGAAAAAATTCAGGAATATCATGGTCTTTATCATGTTTT
ACACGGCCTGATTTCTCCTATGAATGGTATTGGTCCTGATGATATTAATTTGAAAAGTCTTCTGACACGCCTACGTGATA
ATAGTGATATTCATGAAGTCATTATCGCAACTAATGCCACAGCAGATGGAGAAGCAACGGCTATGTATATTTCCAGAGTT
CTCAAACCTGCTGGTATTACAGTTACACGTTTAGCGCGTGGGCTTGCTGTTGGTTCTGACATTGAGTATGCTGATGAAGT
AACTCTGCTTCGAGCAATTGAAAACAGGACAGAGTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

83.92

100

0.839
  recR Bacillus subtilis subsp. subtilis str. 168

63.819

100

0.638
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.98

98.492

0.482

Multiple sequence alignment