Detailed information NTG0426427

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G7L41_RS09040
• Genome accession: NZ_CP049604
• Coordinates: 1833343..1834143 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kp8701
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1828343..1839143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G7L41_RS09020 (G7L41_09020)	dksA	1828923..1829378 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
G7L41_RS09025 (G7L41_09025)	sfsA	1829541..1830257 (-)	717	WP_004177390.1	DNA/RNA nuclease SfsA	-
G7L41_RS09030 (G7L41_09030)	thpR	1830257..1830793 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
G7L41_RS09035 (G7L41_09035)	hrpB	1830866..1833295 (+)	2430	WP_165430064.1	ATP-dependent helicase HrpB	-
G7L41_RS09040 (G7L41_09040)	pilD	1833343..1834143 (-)	801	WP_004145898.1	prepilin peptidase	Machinery gene
G7L41_RS09045 (G7L41_09045)	-	1834140..1834886 (-)	747	WP_031588870.1	type II secretion system protein N	-
G7L41_RS09050 (G7L41_09050)	-	1834876..1835361 (-)	486	WP_023284693.1	type II secretion system protein M	-
G7L41_RS09055 (G7L41_09055)	gspL	1835354..1836547 (-)	1194	WP_004191957.1	type II secretion system protein GspL	-
G7L41_RS09060 (G7L41_09060)	gspK	1836534..1837520 (-)	987	WP_004213439.1	type II secretion system minor pseudopilin GspK	-
G7L41_RS09065 (G7L41_09065)	gspJ	1837517..1838113 (-)	597	WP_004178612.1	type II secretion system minor pseudopilin GspJ	-
G7L41_RS09070 (G7L41_09070)	gspI	1838110..1838475 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
G7L41_RS09075 (G7L41_09075)	gspH	1838472..1838987 (-)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=426427 G7L41_RS09040 WP_004145898.1 1833343..1834143(-) (pilD) [Klebsiella pneumoniae strain Kp8701]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=426427 G7L41_RS09040 WP_004145898.1 1833343..1834143(-) (pilD) [Klebsiella pneumoniae strain Kp8701]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGACTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGTTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425