Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   G6534_RS06410 Genome accession   NZ_CP049366
Coordinates   1325297..1326565 (-) Length   422 a.a.
NCBI ID   WP_182082512.1    Uniprot ID   -
Organism   Companilactobacillus pabuli strain NFFJ11     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1320297..1331565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6534_RS06405 (G6534_06415) - 1323573..1325282 (-) 1710 WP_059073620.1 proline--tRNA ligase -
  G6534_RS06410 (G6534_06420) eeP 1325297..1326565 (-) 1269 WP_182082512.1 RIP metalloprotease RseP Regulator
  G6534_RS12185 - 1326586..1327380 (-) 795 WP_059073618.1 phosphatidate cytidylyltransferase -
  G6534_RS12190 - 1327399..1328142 (-) 744 WP_082666889.1 isoprenyl transferase -
  G6534_RS06420 (G6534_06430) frr 1328148..1328705 (-) 558 WP_059073616.1 ribosome recycling factor -
  G6534_RS06425 (G6534_06435) pyrH 1328695..1329429 (-) 735 WP_010019489.1 UMP kinase -
  G6534_RS06430 (G6534_06440) tsf 1329598..1330473 (-) 876 WP_059073615.1 translation elongation factor Ts -
  G6534_RS06435 (G6534_06445) rpsB 1330544..1331350 (-) 807 WP_059073614.1 30S ribosomal protein S2 -

Sequence


Protein


Download         Length: 422 a.a.        Molecular weight: 45800.34 Da        Isoelectric Point: 9.5977

>NTDB_id=426347 G6534_RS06410 WP_182082512.1 1325297..1326565(-) (eeP) [Companilactobacillus pabuli strain NFFJ11]
MTAIITFIIVFGILVIVHEFGHYYAAKKSGILVREFSVGMGPKIVAYRKNHTTYTLRLLPLGGYVRMAGAQEDDSEIQPG
TMASLVINDDDKVTKIITSSKVYDANAVPVQISKADLVDDLVIEGYENGDETVTKKYSVDHDATIVEEDGTEVQIAPRDV
QLQSVSVWKRMITNFAGPFNNFVLAIVAAIIAAFMMGSVGNGSNQLGSIQKDSVAQKAGLKANDKILSINGKTTASWTDL
SENIQNSPGKKLTMKVQSGKKIETIKVTPKTVKSSGQSYGLIGIMQKTDSSAMAKIKYGFIYSWSTSLTIFHALGKMVSG
GFSINQLSGPVGIYSMTSKVASTGLINIIFFTSMLSMNLGIVNLIPIPALDGGKILLNIVEAIRRKPIPEQYENVITLIG
VGILVLLMIAVTWNDIQRFFIK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=426347 G6534_RS06410 WP_182082512.1 1325297..1326565(-) (eeP) [Companilactobacillus pabuli strain NFFJ11]
ATGACCGCGATAATTACATTTATAATCGTTTTTGGAATTTTGGTAATTGTTCATGAATTTGGACACTATTACGCTGCAAA
AAAATCAGGAATCTTAGTTCGTGAGTTTTCTGTTGGTATGGGACCGAAAATCGTCGCTTACCGCAAAAATCATACGACCT
ATACTTTGAGACTGCTACCTTTGGGTGGTTATGTCCGCATGGCTGGTGCACAAGAAGATGATTCTGAAATTCAACCAGGA
ACGATGGCATCGTTAGTAATTAATGATGACGATAAAGTAACAAAAATTATAACTTCAAGTAAGGTTTATGATGCAAACGC
GGTTCCAGTTCAAATCTCTAAAGCTGATCTTGTTGATGATTTAGTAATTGAAGGATACGAAAATGGTGATGAAACTGTCA
CTAAGAAGTATTCGGTTGATCATGATGCAACGATTGTTGAAGAGGATGGTACGGAAGTGCAGATTGCACCTCGTGACGTT
CAATTGCAATCAGTTTCTGTCTGGAAGCGAATGATCACGAACTTTGCTGGTCCATTTAACAATTTTGTTTTAGCAATCGT
GGCTGCAATTATTGCTGCCTTTATGATGGGATCAGTTGGGAATGGTTCTAATCAATTGGGTAGCATTCAAAAAGATTCAG
TAGCTCAAAAAGCTGGTCTAAAGGCCAACGATAAAATTTTAAGTATTAACGGGAAGACAACTGCTTCTTGGACTGATTTA
TCAGAGAATATTCAAAATAGTCCTGGTAAAAAATTAACGATGAAAGTTCAATCCGGTAAAAAGATTGAAACAATCAAAGT
AACGCCTAAGACAGTTAAATCTTCAGGTCAAAGTTATGGCTTGATCGGTATCATGCAAAAGACCGATTCTTCTGCCATGG
CTAAAATCAAATATGGTTTCATTTATAGCTGGAGCACTTCTTTAACAATTTTCCACGCTTTAGGAAAGATGGTTTCAGGT
GGGTTTAGCATTAATCAATTATCTGGTCCGGTAGGAATTTATTCGATGACTTCTAAAGTCGCCTCAACTGGTTTGATCAA
CATTATTTTCTTCACATCGATGCTGTCAATGAACTTAGGAATTGTCAATTTGATTCCAATTCCAGCGTTAGATGGTGGAA
AAATCTTGTTAAATATTGTTGAAGCAATTAGAAGAAAACCAATTCCAGAACAATATGAAAATGTGATTACCTTAATTGGG
GTCGGAATCTTAGTTCTATTAATGATTGCCGTAACCTGGAATGATATCCAGCGCTTCTTTATAAAATAG

Domains


Predicted by InterproScan.

(6-407)

(208-257)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.712

100

0.493

  eeP Streptococcus thermophilus LMD-9

48.478

100

0.491