Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   G6543_RS16690 Genome accession   NZ_CP049363
Coordinates   3525933..3526460 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3520933..3531460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6543_RS16670 - 3521117..3521992 (-) 876 WP_000218802.1 hypothetical protein -
  G6543_RS16675 aroB 3522008..3523090 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  G6543_RS16680 aroK 3523119..3523688 (-) 570 WP_000643712.1 shikimate kinase AroK -
  G6543_RS16685 pilQ 3523700..3525865 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  G6543_RS16690 pilP 3525933..3526460 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  G6543_RS16695 pilO 3526471..3527211 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  G6543_RS16700 pilN 3527208..3527849 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  G6543_RS16705 pilM 3527849..3528907 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=426331 G6543_RS16690 WP_000695065.1 3525933..3526460(-) (pilP) [Acinetobacter baumannii strain ATCC 17978]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=426331 G6543_RS16690 WP_000695065.1 3525933..3526460(-) (pilP) [Acinetobacter baumannii strain ATCC 17978]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714