Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IF745_RS03885 Genome accession   NZ_CP062338
Coordinates   774584..775357 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain NAS_NP_103     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 769584..780357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF745_RS03850 (IF745_03855) - 769837..770607 (-) 771 WP_000473699.1 isoprenyl transferase -
  IF745_RS03855 (IF745_03860) frr 770980..771534 (-) 555 WP_001280004.1 ribosome recycling factor -
  IF745_RS03860 (IF745_03865) pyrH 771553..772275 (-) 723 WP_000057330.1 UMP kinase -
  IF745_RS03865 (IF745_03870) tsf 772412..773293 (-) 882 WP_000201387.1 translation elongation factor Ts -
  IF745_RS03870 (IF745_03875) - 773328..773441 (-) 114 WP_001789890.1 hypothetical protein -
  IF745_RS03875 (IF745_03880) rpsB 773475..774242 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  IF745_RS03880 (IF745_03885) - 774441..774533 (-) 93 WP_001790530.1 hypothetical protein -
  IF745_RS03885 (IF745_03890) codY 774584..775357 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IF745_RS03890 (IF745_03895) hslU 775382..776785 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  IF745_RS03895 (IF745_03900) hslV 776851..777396 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  IF745_RS03900 (IF745_03905) xerC 777393..778289 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  IF745_RS03905 (IF745_03910) trmFO 778706..780013 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=426330 IF745_RS03885 WP_000055337.1 774584..775357(-) (codY) [Staphylococcus aureus strain NAS_NP_103]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=426330 IF745_RS03885 WP_000055337.1 774584..775357(-) (codY) [Staphylococcus aureus strain NAS_NP_103]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACTATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428