Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   G5S32_RS02430 Genome accession   NZ_CP049331
Coordinates   522465..523073 (-) Length   202 a.a.
NCBI ID   WP_165310318.1    Uniprot ID   A0A6G7CFT5
Organism   Vibrio ziniensis strain ZWAL4003     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 517465..528073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS02420 (G5S32_02420) aceF 518823..520718 (+) 1896 WP_165310316.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  G5S32_RS02425 (G5S32_02425) lpdA 520964..522388 (+) 1425 WP_165310317.1 dihydrolipoyl dehydrogenase -
  G5S32_RS02430 (G5S32_02430) hapR 522465..523073 (-) 609 WP_165310318.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  G5S32_RS02435 (G5S32_02435) hpt 523392..523922 (+) 531 WP_165310319.1 hypoxanthine phosphoribosyltransferase -
  G5S32_RS02440 (G5S32_02440) can 524011..524679 (-) 669 WP_165310320.1 carbonate dehydratase -
  G5S32_RS02445 (G5S32_02445) - 524928..525839 (+) 912 WP_165310321.1 ABC transporter ATP-binding protein -
  G5S32_RS02450 (G5S32_02450) - 525849..526619 (+) 771 WP_165310322.1 ABC transporter permease -
  G5S32_RS02455 (G5S32_02455) panC 526670..527539 (-) 870 WP_165310323.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23557.98 Da        Isoelectric Point: 5.7168

>NTDB_id=426148 G5S32_RS02430 WP_165310318.1 522465..523073(-) (hapR) [Vibrio ziniensis strain ZWAL4003]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLTYVVRQFSNFL
TDNIDLDLSARDNLENITKELVEISYQDCHWLKVWFEWSASTRDEVWPLFMSTNRTNQMLVKNIFSKAIERGEVCEKHDP
EELTILFHGLCYSLFVQANRINDKEAINKLANSYMNMLCIYK

Nucleotide


Download         Length: 609 bp        

>NTDB_id=426148 G5S32_RS02430 WP_165310318.1 522465..523073(-) (hapR) [Vibrio ziniensis strain ZWAL4003]
ATGGACGCATCTATCGAGAAACGACCTAGAACAAGGCTATCTCCCCAGAAACGTAAACTTCAACTCATGGAAATCGCGCT
AGAGGTCTTCGCTAGACGAGGCATTGGTCGTGGTGGTCACGCCGATATCGCTGAAATTGCTCAAGTCTCAGTTGCAACGG
TCTTCAACTACTTCCCTACTCGTGAAGATTTAGTCGATGAAGTACTCACTTATGTTGTTCGTCAGTTCTCTAACTTTTTA
ACTGATAATATTGATTTAGATTTATCAGCTCGAGATAACCTAGAAAATATCACTAAAGAATTGGTGGAAATCAGTTACCA
AGATTGTCATTGGTTAAAAGTATGGTTTGAATGGAGTGCTTCAACTCGTGATGAAGTGTGGCCACTCTTCATGTCTACCA
ACCGTACTAACCAAATGCTGGTTAAGAACATCTTCAGTAAAGCGATTGAACGTGGTGAAGTTTGTGAGAAACATGATCCA
GAAGAGCTAACTATATTGTTCCACGGTCTTTGTTATTCATTGTTTGTTCAAGCAAATCGAATAAACGACAAAGAAGCCAT
AAACAAACTCGCGAATAGCTACATGAATATGCTTTGCATTTATAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CFT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

76.733

100

0.767
  hapR Vibrio cholerae strain A1552

76.733

100

0.767
  opaR Vibrio parahaemolyticus RIMD 2210633

77.778

98.02

0.762