Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   G6536_RS19395 Genome accession   NZ_CP049330
Coordinates   3721309..3722043 (-) Length   244 a.a.
NCBI ID   WP_011198352.1    Uniprot ID   A0A415J866
Organism   Bacillus licheniformis strain CP6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3716309..3727043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS19360 (G6536_19595) fliW 3716460..3716891 (-) 432 WP_025807162.1 flagellar assembly protein FliW -
  G6536_RS19365 (G6536_19600) - 3716913..3717479 (-) 567 WP_003185702.1 DUF6470 family protein -
  G6536_RS19370 (G6536_19605) flgL 3717529..3718440 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  G6536_RS19375 (G6536_19610) flgK 3718451..3719974 (-) 1524 WP_057957825.1 flagellar hook-associated protein FlgK -
  G6536_RS19380 (G6536_19615) - 3719990..3720466 (-) 477 WP_003185711.1 flagellar protein FlgN -
  G6536_RS19385 (G6536_19620) flgM 3720485..3720751 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  G6536_RS19390 (G6536_19625) - 3720831..3721250 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  G6536_RS19395 (G6536_19630) comFC 3721309..3722043 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  G6536_RS19400 (G6536_19635) - 3722000..3722284 (-) 285 WP_003185718.1 competence protein ComFB -
  G6536_RS19405 (G6536_19640) comFA 3722339..3723733 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  G6536_RS19410 (G6536_19645) - 3723854..3724696 (-) 843 WP_003185726.1 DegV family protein -
  G6536_RS19415 (G6536_19650) degU 3724816..3725505 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  G6536_RS19420 (G6536_19655) degS 3725587..3726744 (-) 1158 WP_003185733.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27811.22 Da        Isoelectric Point: 9.4827

>NTDB_id=426126 G6536_RS19395 WP_011198352.1 3721309..3722043(-) (comFC) [Bacillus licheniformis strain CP6]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=426126 G6536_RS19395 WP_011198352.1 3721309..3722043(-) (comFC) [Bacillus licheniformis strain CP6]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J866

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508