Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   G6536_RS13220 Genome accession   NZ_CP049330
Coordinates   2567738..2568073 (+) Length   111 a.a.
NCBI ID   WP_025804940.1    Uniprot ID   A0AB37GFT9
Organism   Bacillus licheniformis strain CP6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2562738..2573073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS13200 (G6536_13390) gcvT 2563170..2564264 (-) 1095 WP_098408292.1 glycine cleavage system aminomethyltransferase GcvT -
  G6536_RS13205 (G6536_13395) - 2564857..2566536 (+) 1680 WP_003183439.1 SNF2-related protein -
  G6536_RS13210 (G6536_13400) - 2566543..2567337 (+) 795 WP_003183441.1 YqhG family protein -
  G6536_RS13215 (G6536_13405) sinI 2567528..2567704 (+) 177 WP_003183444.1 anti-repressor SinI family protein Regulator
  G6536_RS13220 (G6536_13410) sinR 2567738..2568073 (+) 336 WP_025804940.1 helix-turn-helix domain-containing protein Regulator
  G6536_RS13225 (G6536_13415) - 2568178..2568972 (-) 795 WP_003183447.1 TasA family protein -
  G6536_RS13230 (G6536_13420) - 2569046..2569630 (-) 585 WP_003183449.1 signal peptidase I -
  G6536_RS13235 (G6536_13425) tapA 2569627..2570355 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  G6536_RS13240 (G6536_13430) - 2570665..2570952 (+) 288 WP_223307118.1 YqzG/YhdC family protein -
  G6536_RS13245 (G6536_13435) - 2570976..2571158 (-) 183 WP_003183456.1 YqzE family protein -
  G6536_RS13250 (G6536_13440) comGG 2571247..2571612 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  G6536_RS13255 (G6536_13445) comGF 2571625..2572113 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  G6536_RS13260 (G6536_13450) comGE 2572022..2572369 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  G6536_RS13265 (G6536_13455) comGD 2572353..2572790 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12991.60 Da        Isoelectric Point: 5.9495

>NTDB_id=426103 G6536_RS13220 WP_025804940.1 2567738..2568073(+) (sinR) [Bacillus licheniformis strain CP6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=426103 G6536_RS13220 WP_025804940.1 2567738..2568073(+) (sinR) [Bacillus licheniformis strain CP6]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928