Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GYO_RS36080 Genome accession   NC_016047
Coordinates   2809770..2810516 (-) Length   248 a.a.
NCBI ID   WP_041521029.1    Uniprot ID   -
Organism   Bacillus spizizenii TU-B-10     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2804770..2815516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS36055 (GYO_3044) mreC 2805177..2806049 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  GYO_RS36060 (GYO_3045) mreB 2806080..2807093 (-) 1014 WP_014114656.1 cell shape-determining protein MreB -
  GYO_RS36065 (GYO_3046) radC 2807185..2807880 (-) 696 WP_041521028.1 DNA repair protein RadC -
  GYO_RS36070 (GYO_3047) - 2807917..2808486 (-) 570 WP_014114658.1 Maf family nucleotide pyrophosphatase -
  GYO_RS36075 (GYO_3048) spoIIB 2808638..2809636 (-) 999 WP_014114659.1 stage II sporulation protein SpoIIB -
  GYO_RS36080 (GYO_3049) comC 2809770..2810516 (-) 747 WP_041521029.1 A24 family peptidase Machinery gene
  GYO_RS36085 (GYO_3051) - 2810653..2811945 (-) 1293 WP_014114662.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GYO_RS36090 (GYO_3052) valS 2812005..2814647 (-) 2643 WP_041521030.1 valine--tRNA ligase -
  GYO_RS36095 (GYO_3053) - 2815095..2815286 (+) 192 WP_014114664.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26450.13 Da        Isoelectric Point: 9.9495

>NTDB_id=42605 GYO_RS36080 WP_041521029.1 2809770..2810516(-) (comC) [Bacillus spizizenii TU-B-10]
MLPILFLLGLILGSFYYTAGCRIPLHISIITPRSACSFCRRTLTAAELIPILSFLFQKGKCKSCGRRISFMYPAAELVTA
CLFAAAGIRFGSSPELLPAVVFISLLIIVVVTDIHFMLIPNRILILFLPFLAAARLISPLDSWYASLLGAAAGFLFLSLI
AAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYMKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=42605 GYO_RS36080 WP_041521029.1 2809770..2810516(-) (comC) [Bacillus spizizenii TU-B-10]
ATGCTTCCCATTCTTTTTCTCCTCGGGCTAATCCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCTTGCATAT
ATCCATTATCACGCCCCGTTCGGCATGCTCGTTTTGCCGGCGGACATTAACCGCGGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAAGGGCAAATGTAAAAGCTGCGGACGTAGAATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCTCATCTCCGGAACTATTGCCTGCGGTTGTGTTTATCTCTCTTCTCAT
CATTGTTGTAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTATTTCTTCCCTTTTTGGCGGCAG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGCCAGCCTGTTAGGTGCGGCCGCCGGATTTCTTTTCCTGTCCTTAATT
GCCGCAATCACCCATGGAGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAGCTGTCCTGACTGGAAGACTCGCCA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATTATTTCT
TTTTATATGAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

91.935

100

0.919

Multiple sequence alignment