Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   G5571_RS10080 Genome accession   NZ_CP049314
Coordinates   2126023..2126403 (-) Length   126 a.a.
NCBI ID   WP_000836914.1    Uniprot ID   A0A098SJS3
Organism   Acinetobacter baumannii strain Ex003     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2121023..2131403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5571_RS10050 (G5571_02006) tadA 2121142..2121645 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  G5571_RS10055 (G5571_02007) - 2121652..2122776 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  G5571_RS10060 (G5571_02008) ung 2122773..2123486 (-) 714 WP_001177527.1 uracil-DNA glycosylase -
  G5571_RS10065 (G5571_02009) - 2123537..2124133 (-) 597 WP_000908449.1 6-pyruvoyl trahydropterin synthase family protein -
  G5571_RS10070 (G5571_02010) gspK 2124363..2125322 (-) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  G5571_RS10075 (G5571_02011) xcpW 2125322..2126023 (-) 702 WP_000594579.1 type II secretion system minor pseudopilin GspJ Machinery gene
  G5571_RS10080 (G5571_02012) xcpV 2126023..2126403 (-) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  G5571_RS10085 (G5571_02013) - 2126393..2126947 (-) 555 WP_000841373.1 type II secretion system protein -
  G5571_RS10090 (G5571_02014) - 2126957..2127565 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  G5571_RS10095 (G5571_02015) - 2127603..2128376 (-) 774 WP_215820156.1 TatD family hydrolase -
  G5571_RS10100 (G5571_02016) - 2128394..2128735 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  G5571_RS10105 (G5571_02017) - 2128747..2129727 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  G5571_RS10110 (G5571_02018) kdsB 2129739..2130500 (-) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14074.34 Da        Isoelectric Point: 10.0341

>NTDB_id=426016 G5571_RS10080 WP_000836914.1 2126023..2126403(-) (xcpV) [Acinetobacter baumannii strain Ex003]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=426016 G5571_RS10080 WP_000836914.1 2126023..2126403(-) (xcpV) [Acinetobacter baumannii strain Ex003]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098SJS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992