Detailed information NTG0426015

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: G5571_RS10075
• Genome accession: NZ_CP049314
• Coordinates: 2125322..2126023 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain Ex003
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2120322..2131023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G5571_RS10045 (G5571_02005)	-	2120629..2121072 (-)	444	WP_001246675.1	SRPBCC family protein	-
G5571_RS10050 (G5571_02006)	tadA	2121142..2121645 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
G5571_RS10055 (G5571_02007)	-	2121652..2122776 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
G5571_RS10060 (G5571_02008)	ung	2122773..2123486 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
G5571_RS10065 (G5571_02009)	-	2123537..2124133 (-)	597	WP_000908449.1	6-pyruvoyl trahydropterin synthase family protein	-
G5571_RS10070 (G5571_02010)	gspK	2124363..2125322 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
G5571_RS10075 (G5571_02011)	xcpW	2125322..2126023 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
G5571_RS10080 (G5571_02012)	xcpV	2126023..2126403 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
G5571_RS10085 (G5571_02013)	-	2126393..2126947 (-)	555	WP_000841373.1	type II secretion system protein	-
G5571_RS10090 (G5571_02014)	-	2126957..2127565 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
G5571_RS10095 (G5571_02015)	-	2127603..2128376 (-)	774	WP_215820156.1	TatD family hydrolase	-
G5571_RS10100 (G5571_02016)	-	2128394..2128735 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
G5571_RS10105 (G5571_02017)	-	2128747..2129727 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
G5571_RS10110 (G5571_02018)	kdsB	2129739..2130500 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=426015 G5571_RS10075 WP_000594579.1 2125322..2126023(-) (xcpW) [Acinetobacter baumannii strain Ex003]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=426015 G5571_RS10075 WP_000594579.1 2125322..2126023(-) (xcpW) [Acinetobacter baumannii strain Ex003]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983