Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IF764_RS09690 Genome accession   NZ_CP062326
Coordinates   1976254..1977366 (-) Length   370 a.a.
NCBI ID   WP_000775116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_043     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1971254..1982366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF764_RS09680 (IF764_09625) gyrA 1971610..1974273 (-) 2664 WP_240029546.1 DNA gyrase subunit A -
  IF764_RS09685 (IF764_09630) gyrB 1974310..1976244 (-) 1935 WP_000255583.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  IF764_RS09690 (IF764_09635) recF 1976254..1977366 (-) 1113 WP_000775116.1 DNA replication/repair protein RecF Machinery gene
  IF764_RS09695 (IF764_09640) yaaA 1977363..1977608 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  IF764_RS09700 (IF764_09645) dnaN 1977990..1979123 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  IF764_RS09705 (IF764_09650) dnaA 1979401..1980762 (-) 1362 WP_001290430.1 chromosomal replication initiator protein DnaA -
  IF764_RS09710 (IF764_09655) rpmH 1981493..1981630 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  IF764_RS09715 (IF764_09660) rnpA 1981751..1982104 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42445.46 Da        Isoelectric Point: 6.4362

>NTDB_id=425920 IF764_RS09690 WP_000775116.1 1976254..1977366(-) (recF) [Staphylococcus aureus strain NAS_OP_043]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEATR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=425920 IF764_RS09690 WP_000775116.1 1976254..1977366(-) (recF) [Staphylococcus aureus strain NAS_OP_043]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCGAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGACACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACAGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497