Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GYO_RS34370 Genome accession   NC_016047
Coordinates   2501209..2502939 (-) Length   576 a.a.
NCBI ID   WP_014114357.1    Uniprot ID   G4NQ46
Organism   Bacillus spizizenii TU-B-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2496209..2507939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS34345 (GYO_2677) - 2496603..2497265 (+) 663 Protein_2462 YtxH domain-containing protein -
  GYO_RS44280 - 2497242..2497385 (-) 144 Protein_2463 helix-turn-helix domain-containing protein -
  GYO_RS34350 (GYO_2678) - 2497551..2498525 (-) 975 WP_014114354.1 tyrosine-type recombinase/integrase -
  GYO_RS34355 (GYO_2679) spo0A 2498674..2499477 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  GYO_RS34365 (GYO_2681) spoIVB 2499754..2501034 (-) 1281 WP_014114356.1 SpoIVB peptidase -
  GYO_RS34370 (GYO_2682) recN 2501209..2502939 (-) 1731 WP_014114357.1 DNA repair protein RecN Machinery gene
  GYO_RS34375 (GYO_2684) argR 2502975..2503424 (-) 450 WP_014114358.1 arginine repressor ArgR -
  GYO_RS34380 (GYO_2685) - 2503521..2504366 (-) 846 WP_014114359.1 TlyA family RNA methyltransferase -
  GYO_RS34385 (GYO_2686) dxs 2504363..2506264 (-) 1902 WP_014114360.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GYO_RS34390 (GYO_2688) - 2506445..2507335 (-) 891 WP_014114362.1 polyprenyl synthetase family protein -
  GYO_RS34395 (GYO_2689) - 2507325..2507579 (-) 255 WP_014114363.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64681.44 Da        Isoelectric Point: 4.7405

>NTDB_id=42587 GYO_RS34370 WP_014114357.1 2501209..2502939(-) (recN) [Bacillus spizizenii TU-B-10]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFDVC
TEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYHRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EEILEYASKIEEEIDQIENRDSHLQSVKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPIVNGQPVQLTDQGIDLVRFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=42587 GYO_RS34370 WP_014114357.1 2501209..2502939(-) (recN) [Bacillus spizizenii TU-B-10]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGAGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGACGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTCAGATATGGAGAGACAAAAGCCGAGCTTGAAGGGCTGTTTCTATTGGAGAGCGGCCACCCCGTTTTTGACGTATGC
ACTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
TGTTAATGGCAAGCTTGTCACGATTGCTTCGTTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGTAGAAAGCGCGCTTCAA
GCATATCAGGAAGGGTACCATCGGTATATGAAGCTGCTTAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTGGACCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTCGAGCTTAATGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATCTATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTCGAAGATATATCCGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTGTCGAACTCTTACTATCTGCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGCCTGAATTATATTGAGACGCGTCTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCAACTGTT
GAGGAGATTTTGGAATACGCCTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCATCTTCAAAGCGT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTTGCGGTGGAAGCGGCAAATGTTTCACAAATCCGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGAGAATTAAAAAGCCTCTATATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCTCGCAATGAGGAGGCGCCGATTGTAAACGGCCAGCCTGTTCAGCTGACTGACCAAGGAATTGATCTGGT
CAGGTTTTTAATTTCAACCAACACAGGCGAGCCTTTGAAATCCCTTTCGAAAGTCGCTTCCGGAGGGGAGCTGTCCCGGG
TGATGCTTGCCATCAAAAGCATTTTTTCCTCGCAGCAGGATGTGACGTCGATTATATTCGATGAGGTAGATACCGGTGTA
AGCGGCAGAGTCGCGCAGGCAATCGCTGAGAAGATCCATAAAGTCTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTAGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACCACGACACGTGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCCGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTCTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NQ46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.049

100

0.97

Multiple sequence alignment