Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GYO_RS34355 Genome accession   NC_016047
Coordinates   2498674..2499477 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus spizizenii TU-B-10     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2493674..2504477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS43120 (GYO_2676) - 2495592..2495855 (-) 264 WP_014114352.1 hypothetical protein -
  GYO_RS34345 (GYO_2677) - 2496603..2497265 (+) 663 Protein_2462 YtxH domain-containing protein -
  GYO_RS44280 - 2497242..2497385 (-) 144 Protein_2463 helix-turn-helix domain-containing protein -
  GYO_RS34350 (GYO_2678) - 2497551..2498525 (-) 975 WP_014114354.1 tyrosine-type recombinase/integrase -
  GYO_RS34355 (GYO_2679) spo0A 2498674..2499477 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  GYO_RS34365 (GYO_2681) spoIVB 2499754..2501034 (-) 1281 WP_014114356.1 SpoIVB peptidase -
  GYO_RS34370 (GYO_2682) recN 2501209..2502939 (-) 1731 WP_014114357.1 DNA repair protein RecN Machinery gene
  GYO_RS34375 (GYO_2684) argR 2502975..2503424 (-) 450 WP_014114358.1 arginine repressor ArgR -
  GYO_RS34380 (GYO_2685) - 2503521..2504366 (-) 846 WP_014114359.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=42586 GYO_RS34355 WP_003226427.1 2498674..2499477(-) (spo0A) [Bacillus spizizenii TU-B-10]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=42586 GYO_RS34355 WP_003226427.1 2498674..2499477(-) (spo0A) [Bacillus spizizenii TU-B-10]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGATGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCTTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAATCTTGTCGGACATATCCGCCAAGTCAGCGGAAATGCCAGCAGCGTGACGCATCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCACATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
TGAATTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCGATCCGCCATGCGATCGAAGTGGCATGGAGCAGAGGTAACATTGATTCCATTTCCTCGCTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGCGAATTCATTGCAATGGTTGCGGATAAGCTTAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment