Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVT17_RS06540 Genome accession   NZ_CP049272
Coordinates   1300126..1300896 (-) Length   256 a.a.
NCBI ID   WP_107858884.1    Uniprot ID   -
Organism   Campylobacter concisus strain P27CDO-S2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1295126..1305896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT17_RS06510 (CVT17_06520) hemW 1295648..1296694 (+) 1047 WP_107858889.1 radical SAM family heme chaperone HemW -
  CVT17_RS06515 (CVT17_06525) tatB 1296762..1297160 (+) 399 WP_085658241.1 Sec-independent protein translocase protein TatB -
  CVT17_RS06520 (CVT17_06530) tatC 1297160..1297918 (+) 759 WP_107858888.1 twin-arginine translocase subunit TatC -
  CVT17_RS06525 (CVT17_06535) queA 1297911..1298933 (+) 1023 WP_107858887.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CVT17_RS06530 (CVT17_06540) - 1298930..1299730 (+) 801 WP_107858886.1 hypothetical protein -
  CVT17_RS06535 (CVT17_06545) ruvX 1299746..1300129 (-) 384 WP_107858885.1 Holliday junction resolvase RuvX -
  CVT17_RS06540 (CVT17_06550) dprA 1300126..1300896 (-) 771 WP_107858884.1 DNA-processing protein DprA Machinery gene
  CVT17_RS06545 (CVT17_06555) - 1300893..1302284 (-) 1392 WP_107858883.1 divergent polysaccharide deacetylase family protein -
  CVT17_RS06550 (CVT17_06560) ilvC 1302288..1303310 (-) 1023 WP_107770120.1 ketol-acid reductoisomerase -
  CVT17_RS06555 (CVT17_06565) - 1303454..1304272 (+) 819 WP_107770119.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28066.55 Da        Isoelectric Point: 5.8980

>NTDB_id=425809 CVT17_RS06540 WP_107858884.1 1300126..1300896(-) (dprA) [Campylobacter concisus strain P27CDO-S2]
MRLDFIPEPLNRLKNPPKQLNFIGDTSLLSLPKIAVVGSRKASVYTKECVTALCAVLKSANICVVSGGAIGVDIAAHKAA
MPRTIGIFASGLDTIYPSQNKAAINEIYTKALALSEYDEGEPPLAYRFLERNRIVVGLCEALVVAQADLKSGSMQSARLA
NELKIPVYVLPQRIGESDGTNFLLANKKVELIDDYHKFASLFGEIREQEKTSDEILKFCKNGVSLDEVLAKFGDIIYEYE
LEGLVEISNLRVKSVL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=425809 CVT17_RS06540 WP_107858884.1 1300126..1300896(-) (dprA) [Campylobacter concisus strain P27CDO-S2]
ATGAGACTTGACTTTATCCCAGAGCCACTAAATAGGCTAAAAAATCCACCAAAGCAGCTAAATTTTATCGGAGATACTTC
GCTTTTATCTTTGCCAAAGATCGCAGTTGTTGGCTCAAGAAAGGCAAGTGTTTATACAAAAGAGTGTGTCACAGCACTTT
GCGCAGTACTAAAAAGTGCAAATATCTGTGTGGTAAGTGGTGGAGCAATCGGCGTTGATATCGCAGCTCATAAAGCTGCT
ATGCCACGAACGATTGGCATTTTTGCGAGCGGACTTGATACCATCTATCCAAGCCAAAATAAAGCGGCGATAAATGAAAT
TTACACCAAAGCCTTGGCTCTTAGTGAGTATGATGAAGGTGAGCCGCCACTTGCTTATAGATTTTTGGAGCGAAACCGCA
TAGTTGTGGGGCTTTGTGAAGCTCTAGTTGTCGCGCAAGCTGATCTTAAAAGTGGCTCAATGCAAAGTGCAAGGCTTGCA
AACGAGCTTAAAATCCCAGTTTATGTACTGCCACAGCGCATTGGCGAAAGCGATGGGACAAATTTTTTGCTTGCAAATAA
AAAAGTCGAGCTTATCGATGACTATCATAAATTTGCTTCACTTTTTGGTGAGATAAGAGAGCAAGAAAAGACTAGTGACG
AGATCTTAAAATTTTGTAAAAATGGCGTAAGTCTTGATGAAGTTTTGGCAAAATTTGGCGATATAATCTATGAGTACGAG
CTTGAAGGGCTAGTTGAAATTTCAAATCTAAGAGTAAAGAGCGTGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.652

91.016

0.516
  dprA Helicobacter pylori 26695

41.699

100

0.422