Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVT07_RS06265 Genome accession   NZ_CP049264
Coordinates   1240584..1241354 (-) Length   256 a.a.
NCBI ID   WP_107935758.1    Uniprot ID   -
Organism   Campylobacter concisus strain P11CDO-S1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1235584..1246354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT07_RS06235 (CVT07_06235) hemW 1236136..1237182 (+) 1047 WP_107935764.1 radical SAM family heme chaperone HemW -
  CVT07_RS06240 (CVT07_06240) tatB 1237250..1237648 (+) 399 WP_012140063.1 Sec-independent protein translocase protein TatB -
  CVT07_RS06245 (CVT07_06245) tatC 1237648..1238403 (+) 756 WP_103570348.1 twin-arginine translocase subunit TatC -
  CVT07_RS06250 (CVT07_06250) queA 1238396..1239418 (+) 1023 WP_107935957.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CVT07_RS06255 (CVT07_06255) - 1239415..1240209 (+) 795 WP_107935760.1 hypothetical protein -
  CVT07_RS06260 (CVT07_06260) ruvX 1240204..1240587 (-) 384 WP_004317765.1 Holliday junction resolvase RuvX -
  CVT07_RS06265 (CVT07_06265) dprA 1240584..1241354 (-) 771 WP_107935758.1 DNA-processing protein DprA Machinery gene
  CVT07_RS06270 (CVT07_06270) - 1241351..1242799 (-) 1449 WP_107935757.1 divergent polysaccharide deacetylase family protein -
  CVT07_RS06275 (CVT07_06275) ilvC 1242803..1243825 (-) 1023 WP_107935755.1 ketol-acid reductoisomerase -
  CVT07_RS06280 (CVT07_06280) - 1243972..1244790 (+) 819 WP_012140069.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 27861.34 Da        Isoelectric Point: 5.5070

>NTDB_id=425772 CVT07_RS06265 WP_107935758.1 1240584..1241354(-) (dprA) [Campylobacter concisus strain P11CDO-S1]
MKLEIIPEALNRLKNPPKELNFIGDTSLLSMPKVAVVGSRKASVYTKECVTALCTALKSANVCVVSGGAIGVDITAHKAA
MPRTIGVFANGLDIIYPAQNKVAIREIYEKGLALSEYDEGEPPIAYRFLERNRIVVGLAQALVVAQADLRSGSMQSARLA
NELKIPLFVLPQRINESSGTNALLASKKAELIDDYVKFASLFGEVKEQEKADDEILKFCKNGVSLDEALAKFGEIIYEYE
LDGLVEISNLRVKSAL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=425772 CVT07_RS06265 WP_107935758.1 1240584..1241354(-) (dprA) [Campylobacter concisus strain P11CDO-S1]
ATGAAGCTTGAAATCATCCCAGAGGCGCTAAATAGGCTAAAAAATCCCCCAAAAGAGCTAAATTTCATAGGTGACACCTC
GCTTCTTAGCATGCCAAAAGTTGCAGTCGTTGGCTCAAGAAAGGCAAGTGTTTATACAAAAGAGTGTGTCACGGCACTTT
GCACAGCGCTAAAAAGTGCAAATGTCTGCGTGGTGAGCGGTGGGGCTATCGGCGTGGATATCACGGCGCACAAGGCTGCC
ATGCCACGAACTATCGGCGTTTTTGCAAATGGACTTGATATCATCTATCCAGCTCAAAACAAAGTAGCGATAAGAGAAAT
TTATGAAAAAGGCTTGGCTCTAAGCGAGTATGACGAGGGCGAGCCACCGATCGCTTATAGGTTTTTAGAGCGAAACCGCA
TAGTTGTGGGGCTCGCGCAAGCTCTTGTGGTGGCACAAGCTGATCTAAGAAGTGGCTCGATGCAAAGTGCGAGGCTTGCA
AATGAGCTTAAAATCCCTCTCTTTGTCCTGCCTCAGCGCATAAATGAGAGTAGTGGAACAAATGCTTTGCTGGCTAGCAA
AAAGGCCGAGCTTATCGATGATTACGTTAAATTTGCCTCACTTTTTGGTGAGGTAAAAGAGCAAGAAAAAGCTGATGATG
AGATATTGAAATTTTGTAAAAATGGCGTTAGCCTTGATGAAGCATTGGCTAAATTTGGCGAGATCATTTACGAGTACGAG
CTTGACGGGCTAGTTGAAATTTCAAATTTAAGAGTAAAAAGCGCGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.794

91.016

0.508
  dprA Helicobacter pylori 26695

45.418

98.047

0.445