Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IF771_RS12565 Genome accession   NZ_CP062320
Coordinates   2483240..2484352 (+) Length   370 a.a.
NCBI ID   WP_240026499.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2478240..2489352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF771_RS12540 (IF771_12530) rnpA 2478503..2478856 (-) 354 WP_001789343.1 ribonuclease P protein component -
  IF771_RS12545 (IF771_12535) rpmH 2478977..2479114 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  IF771_RS12550 (IF771_12540) dnaA 2479845..2481206 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  IF771_RS12555 (IF771_12545) dnaN 2481484..2482617 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  IF771_RS12560 (IF771_12550) yaaA 2482998..2483243 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  IF771_RS12565 (IF771_12555) recF 2483240..2484352 (+) 1113 WP_240026499.1 DNA replication/repair protein RecF Machinery gene
  IF771_RS12570 (IF771_12560) gyrB 2484362..2486296 (+) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  IF771_RS12575 (IF771_12565) gyrA 2486333..2488996 (+) 2664 WP_000819066.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42461.52 Da        Isoelectric Point: 6.4349

>NTDB_id=425664 IF771_RS12565 WP_240026499.1 2483240..2484352(+) (recF) [Staphylococcus aureus strain NAS_OP_101]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIECELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=425664 IF771_RS12565 WP_240026499.1 2483240..2484352(+) (recF) [Staphylococcus aureus strain NAS_OP_101]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAATGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.062

100

0.495