Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G5B95_RS06440 Genome accession   NZ_CP049237
Coordinates   1265738..1266508 (-) Length   256 a.a.
NCBI ID   WP_103576394.1    Uniprot ID   -
Organism   Campylobacter concisus strain H1O1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1260738..1271508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5B95_RS06410 (G5B95_06420) hemW 1261260..1262306 (+) 1047 WP_103576390.1 radical SAM family heme chaperone HemW -
  G5B95_RS06415 (G5B95_06425) tatB 1262374..1262772 (+) 399 WP_103576391.1 Sec-independent protein translocase protein TatB -
  G5B95_RS06420 (G5B95_06430) tatC 1262772..1263530 (+) 759 WP_021091515.1 twin-arginine translocase subunit TatC -
  G5B95_RS06425 (G5B95_06435) queA 1263523..1264545 (+) 1023 WP_103576392.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  G5B95_RS06430 (G5B95_06440) - 1264542..1265342 (+) 801 WP_103576393.1 hypothetical protein -
  G5B95_RS06435 (G5B95_06445) ruvX 1265358..1265741 (-) 384 WP_087583917.1 Holliday junction resolvase RuvX -
  G5B95_RS06440 (G5B95_06450) dprA 1265738..1266508 (-) 771 WP_103576394.1 DNA-processing protein DprA Machinery gene
  G5B95_RS06445 (G5B95_06455) - 1266505..1267896 (-) 1392 WP_103576395.1 divergent polysaccharide deacetylase family protein -
  G5B95_RS06450 (G5B95_06460) ilvC 1267900..1268922 (-) 1023 WP_054196937.1 ketol-acid reductoisomerase -
  G5B95_RS06455 (G5B95_06465) - 1269065..1269883 (+) 819 WP_021091523.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28114.65 Da        Isoelectric Point: 5.9064

>NTDB_id=425626 G5B95_RS06440 WP_103576394.1 1265738..1266508(-) (dprA) [Campylobacter concisus strain H1O1]
MRLDFIPEPLNRLKNPPKQLNFIGDTSLLSLPKIAVVGSRKASVYTKECVTALCAALKSANVCVVSGGAIGVDITAHKAA
MPRTIGIFASGLDTIYPSQNKVVIKEIYEKALALSEYDEGEPPLAYRFLERNRIVVGLCEALVVAQADLKSGSMQSARLA
NELKIPVYVLPQRMGESDGTNFLLANKKAELIDDYHKFASLFGEIKEQEKTSDEILKFCKNGVSLDEVLAKFGDIIYEYE
LEGLVEISNLRVKSVL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=425626 G5B95_RS06440 WP_103576394.1 1265738..1266508(-) (dprA) [Campylobacter concisus strain H1O1]
ATGAGACTTGATTTTATCCCAGAGCCGTTAAATAGACTAAAAAATCCACCAAAACAGCTAAATTTTATCGGAGATACTTC
GCTTTTATCTTTGCCAAAGATCGCAGTTGTTGGCTCAAGAAAGGCAAGTGTTTATACAAAAGAGTGCGTTACGGCACTTT
GCGCAGCACTAAAAAGTGCAAACGTCTGCGTGGTAAGTGGCGGAGCTATCGGCGTTGATATCACAGCTCATAAAGCTGCT
ATGCCACGAACGATTGGTATTTTTGCGAGCGGACTTGACACCATCTATCCAAGCCAAAATAAAGTGGTGATAAAAGAAAT
TTATGAAAAAGCCTTGGCTCTTAGTGAGTATGATGAAGGTGAGCCACCACTTGCTTATAGATTTTTGGAGCGAAACCGCA
TAGTTGTGGGGCTTTGTGAAGCTCTAGTCGTCGCGCAAGCTGATCTTAAAAGTGGCTCAATGCAAAGTGCAAGGCTTGCA
AACGAGCTTAAAATTCCAGTTTATGTACTGCCACAGCGCATGGGCGAAAGCGATGGGACAAATTTTTTGCTTGCAAATAA
AAAAGCCGAGCTTATTGATGACTATCATAAATTTGCTTCACTTTTTGGCGAGATAAAAGAGCAAGAAAAGACTAGTGACG
AGATTTTAAAATTTTGTAAAAATGGTGTAAGCCTTGATGAAGTTTTGGCAAAATTTGGCGATATCATCTATGAGTATGAG
CTTGAGGGGCTAGTTGAAATTTCAAATCTAAGAGTGAAGAGCGTGTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.369

91.016

0.531
  dprA Helicobacter pylori 26695

42.857

100

0.434