Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G6Z83_RS02350 Genome accession   NZ_CP049228
Coordinates   465354..465806 (+) Length   150 a.a.
NCBI ID   WP_164823932.1    Uniprot ID   A0A6G7B8D0
Organism   Lactobacillus iners strain C0210C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 460354..470806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z83_RS02310 (G6Z83_02310) - 460659..460961 (-) 303 WP_164823926.1 helix-turn-helix transcriptional regulator -
  G6Z83_RS02315 (G6Z83_02315) - 461490..461714 (+) 225 WP_164823927.1 helix-turn-helix transcriptional regulator -
  G6Z83_RS02320 (G6Z83_02320) - 461762..462526 (+) 765 WP_164823928.1 phage antirepressor KilAC domain-containing protein -
  G6Z83_RS02325 (G6Z83_02325) - 462578..462892 (+) 315 WP_240398573.1 helix-turn-helix domain-containing protein -
  G6Z83_RS02330 (G6Z83_02330) - 463238..463387 (+) 150 WP_164823929.1 hypothetical protein -
  G6Z83_RS02335 (G6Z83_02335) - 463513..463989 (+) 477 WP_164823930.1 siphovirus Gp157 family protein -
  G6Z83_RS02340 (G6Z83_02340) - 463999..464703 (+) 705 WP_206535585.1 ERF family protein -
  G6Z83_RS02345 (G6Z83_02345) - 464719..465357 (+) 639 WP_164823931.1 hypothetical protein -
  G6Z83_RS02350 (G6Z83_02350) ssb 465354..465806 (+) 453 WP_164823932.1 single-stranded DNA-binding protein Machinery gene
  G6Z83_RS02355 (G6Z83_02355) - 466039..466521 (+) 483 WP_006737665.1 hypothetical protein -
  G6Z83_RS02360 (G6Z83_02360) - 467602..467790 (+) 189 WP_006729801.1 type II toxin-antitoxin system HicA family toxin -
  G6Z83_RS02365 (G6Z83_02365) - 467840..468235 (+) 396 WP_006729802.1 type II toxin-antitoxin system HicB family antitoxin -
  G6Z83_RS02370 (G6Z83_02370) - 468340..468807 (+) 468 WP_006730906.1 hypothetical protein -
  G6Z83_RS02375 (G6Z83_02375) - 468797..470026 (+) 1230 WP_164823933.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16243.20 Da        Isoelectric Point: 6.9777

>NTDB_id=425557 G6Z83_RS02350 WP_164823932.1 465354..465806(+) (ssb) [Lactobacillus iners strain C0210C1]
MINRIVLVGRLTKDPDFRVTSSGISVATFTLAVGRKFGSDKNGTDFISCVAWRKAGEIISQYTHKGSPLAIDGRLQTRTY
DYKDGKRVYVTEVIVDNFTLLGSKSDNQSQGPAPATINQPPVATQTSTNTQDPFADVGNALDISADDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=425557 G6Z83_RS02350 WP_164823932.1 465354..465806(+) (ssb) [Lactobacillus iners strain C0210C1]
ATGATTAATAGAATTGTACTAGTTGGTCGTTTGACTAAAGACCCAGATTTCAGAGTTACGTCAAGTGGTATATCAGTTGC
TACTTTTACGTTAGCAGTTGGTAGAAAATTTGGCAGTGATAAGAATGGCACTGATTTTATCAGCTGTGTAGCCTGGAGAA
AAGCAGGCGAGATAATTTCCCAGTACACACATAAAGGTAGCCCACTTGCAATTGATGGTCGACTTCAAACTAGAACTTAT
GACTATAAAGATGGTAAGCGAGTTTATGTAACAGAAGTTATTGTTGATAATTTCACATTACTTGGTAGTAAATCAGATAA
CCAAAGTCAAGGACCAGCTCCAGCAACTATCAATCAACCACCAGTTGCAACACAAACTTCAACTAATACACAAGATCCAT
TTGCTGATGTTGGCAATGCACTTGATATTAGTGCAGATGACTTACCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7B8D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

48.851

100

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.279

100

0.473