Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | GYO_RS22140 | Genome accession | NC_016047 |
| Coordinates | 103651..106083 (+) | Length | 810 a.a. |
| NCBI ID | WP_003225731.1 | Uniprot ID | G4NQC0 |
| Organism | Bacillus spizizenii TU-B-10 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 98651..111083
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYO_RS22125 (GYO_0109) | ctsR | 101528..101992 (+) | 465 | WP_014112327.1 | transcriptional regulator CtsR | - |
| GYO_RS22130 (GYO_0110) | mcsA | 102006..102563 (+) | 558 | WP_014112328.1 | protein-arginine kinase activator protein McsA | - |
| GYO_RS22135 (GYO_0111) | - | 102563..103654 (+) | 1092 | WP_014112329.1 | protein arginine kinase | - |
| GYO_RS22140 (GYO_0112) | clpC | 103651..106083 (+) | 2433 | WP_003225731.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| GYO_RS22145 (GYO_0113) | radA | 106175..107551 (+) | 1377 | WP_014112330.1 | DNA repair protein RadA | Machinery gene |
| GYO_RS22150 (GYO_0114) | disA | 107555..108637 (+) | 1083 | WP_014112331.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| GYO_RS22155 (GYO_0115) | - | 108752..109852 (+) | 1101 | WP_014112332.1 | PIN/TRAM domain-containing protein | - |
| GYO_RS22160 (GYO_0116) | ispD | 109866..110564 (+) | 699 | WP_014112333.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| GYO_RS22165 (GYO_0117) | ispF | 110557..111033 (+) | 477 | WP_014112334.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 90063.57 Da Isoelectric Point: 6.1203
>NTDB_id=42552 GYO_RS22140 WP_003225731.1 103651..106083(+) (clpC) [Bacillus spizizenii TU-B-10]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSATGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
EIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGE
FVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSATGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
EIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGE
FVVKTTAKTN
Nucleotide
Download Length: 2433 bp
>NTDB_id=42552 GYO_RS22140 WP_003225731.1 103651..106083(+) (clpC) [Bacillus spizizenii TU-B-10]
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTACTGGCGCTTGCACAGGAAGAAGCACTCCGTTTAGGTCATAA
TAACATTGGCACTGAGCATATTTTATTAGGACTGGTACGAGAAGGAGAAGGGATTGCTGCTAAAGCTCTACAAGCGCTTG
GGCTTGGTTCAGATAAAATTCAAAAAGAAGTTGAAAGTTTGATCGGTCGCGGGCAGGAAATGTCTCAAACGATTCATTAC
ACTCCTAGAGCTAAGAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTCGGGCATTCTTATGTCGGGACAGAACA
TATTCTTCTTGGTCTGATTCGCGAAGGTGAAGGTGTTGCTGCGAGAGTGCTGAATAACCTCGGTGTCAGCTTAAATAAAG
CAAGACAGCAGGTGCTACAGCTTCTTGGAAGCAATGAAACAGGATCATCAGCGACAGGAACAAACAGCAATGCGAATACG
CCTACGCTTGACAGCTTGGCAAGAGACTTAACTGCTATTGCGAAGGAAGACAGCCTTGATCCTGTAATCGGAAGAAGCAA
GGAAATTCAGCGTGTGATCGAAGTGTTAAGCCGCAGAACGAAAAACAACCCTGTTCTCATTGGTGAACCAGGTGTAGGTA
AAACGGCTATCGCAGAAGGTTTGGCACAGCAAATTATCAATAACGAAGTTCCTGAAATCTTGCGCGATAAACGCGTGATG
ACATTAGACATGGGAACAGTTGTTGCCGGCACAAAATACCGCGGTGAATTTGAGGATCGCCTGAAAAAAGTCATGGATGA
AATTCGCCAGGCAGGAAACATCATTCTATTCATCGATGAGCTTCATACATTAATCGGAGCGGGCGGAGCAGAAGGTGCCA
TTGACGCATCTAACATTTTAAAACCTTCACTTGCTCGCGGTGAACTTCAATGTATTGGAGCGACGACTCTTGATGAGTAC
CGTAAATATATTGAAAAAGATGCAGCGTTGGAACGCCGTTTTCAGCCGATACAGGTTGATCAGCCGTCTGCAGATGAAAG
TATTCAAATTTTAAAAGGCTTGCGTGACCGATATGAAGCTCATCACCGAGTATCAATTACAGATGATGCCATTGAAGCTG
CGGTTAAGCTTTCTGACAGATATATTTCTGACCGTTTCCTTCCGGATAAAGCAATTGACTTAATCGATGAAGCGGGTTCA
AAGGTGAGACTGCGCTCCTTTACAACGCCTCCTAACTTAAAGGAGCTTGAACAGAAGCTTGATGAGGTTCGTAAAGAGAA
GGATGCGGCAGTGCAAAGCCAAGAGTTTGAAAAAGCAGCTTCCTTGCGTGATACTGAGCAGCGCCTGCGCGAGCAAGTAG
AGGATACGAAGAAATCATGGAAAGAGAAGCAAGGGCAGGAAAACTCAGAGGTTACTGTTGATGATATTGCGATGGTTGTA
TCCAGCTGGACTGGGGTGCCTGTATCTAAAATCGCCCAAACTGAAACAGATAAGCTTCTCAATATGGAAAGCATTCTTCA
CTCCCGTGTCATTGGCCAGGATGAAGCAGTTGTAGCTGTTGCAAAAGCAGTTAGACGTGCAAGAGCAGGATTAAAAGATC
CTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTTGGTAAAACAGAGCTTGCGCGAGCACTTGCTGAA
TCCATTTTCGGTGATGAGGAAGCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCAACTTCAAGACTTGT
CGGTTCACCTCCGGGATATGTGGGATACGATGAAGGCGGCCAATTAACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCG
TGCTTCTTGATGAGATTGAGAAAGCGCACCCTGATGTCTTCAATATCCTCCTGCAAGTTCTTGAAGACGGACGATTGACT
GATTCTAAGGGACGTACAGTCGATTTCCGTAATACCATTCTGATTATGACGTCAAACGTCGGAGCAAGTGAGCTGAAACG
CAATAAATATGTCGGCTTTAACGTTCAGGATGAGACGCAAAATCATAAAGACATGAAAGATAAAGTGATGGGTGAATTGA
AACGTGCGTTCAGACCGGAGTTTATCAACCGGATTGATGAAATCATTGTCTTCCATTCACTTGAGAAAAAACATCTCACT
GAAATCGTGTCATTGATGTCTGATCAATTAACAAAACGCCTGAAAGAACAGGATCTTTCTATCGAATTGACCGATGCTGC
AAAAGCGAAAGTCGCGGAAGAGGGCGTTGACTTGGAATACGGTGCCCGTCCGTTAAGAAGAGCTATCCAAAAACATGTCG
AGGACCGTTTATCTGAAGAACTCCTCCGAGGAAATATTCATAAAGGACAGCATATCGTTCTCGATGTAGAAGACGGCGAA
TTTGTCGTAAAAACGACTGCTAAAACGAATTAA
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTACTGGCGCTTGCACAGGAAGAAGCACTCCGTTTAGGTCATAA
TAACATTGGCACTGAGCATATTTTATTAGGACTGGTACGAGAAGGAGAAGGGATTGCTGCTAAAGCTCTACAAGCGCTTG
GGCTTGGTTCAGATAAAATTCAAAAAGAAGTTGAAAGTTTGATCGGTCGCGGGCAGGAAATGTCTCAAACGATTCATTAC
ACTCCTAGAGCTAAGAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTCGGGCATTCTTATGTCGGGACAGAACA
TATTCTTCTTGGTCTGATTCGCGAAGGTGAAGGTGTTGCTGCGAGAGTGCTGAATAACCTCGGTGTCAGCTTAAATAAAG
CAAGACAGCAGGTGCTACAGCTTCTTGGAAGCAATGAAACAGGATCATCAGCGACAGGAACAAACAGCAATGCGAATACG
CCTACGCTTGACAGCTTGGCAAGAGACTTAACTGCTATTGCGAAGGAAGACAGCCTTGATCCTGTAATCGGAAGAAGCAA
GGAAATTCAGCGTGTGATCGAAGTGTTAAGCCGCAGAACGAAAAACAACCCTGTTCTCATTGGTGAACCAGGTGTAGGTA
AAACGGCTATCGCAGAAGGTTTGGCACAGCAAATTATCAATAACGAAGTTCCTGAAATCTTGCGCGATAAACGCGTGATG
ACATTAGACATGGGAACAGTTGTTGCCGGCACAAAATACCGCGGTGAATTTGAGGATCGCCTGAAAAAAGTCATGGATGA
AATTCGCCAGGCAGGAAACATCATTCTATTCATCGATGAGCTTCATACATTAATCGGAGCGGGCGGAGCAGAAGGTGCCA
TTGACGCATCTAACATTTTAAAACCTTCACTTGCTCGCGGTGAACTTCAATGTATTGGAGCGACGACTCTTGATGAGTAC
CGTAAATATATTGAAAAAGATGCAGCGTTGGAACGCCGTTTTCAGCCGATACAGGTTGATCAGCCGTCTGCAGATGAAAG
TATTCAAATTTTAAAAGGCTTGCGTGACCGATATGAAGCTCATCACCGAGTATCAATTACAGATGATGCCATTGAAGCTG
CGGTTAAGCTTTCTGACAGATATATTTCTGACCGTTTCCTTCCGGATAAAGCAATTGACTTAATCGATGAAGCGGGTTCA
AAGGTGAGACTGCGCTCCTTTACAACGCCTCCTAACTTAAAGGAGCTTGAACAGAAGCTTGATGAGGTTCGTAAAGAGAA
GGATGCGGCAGTGCAAAGCCAAGAGTTTGAAAAAGCAGCTTCCTTGCGTGATACTGAGCAGCGCCTGCGCGAGCAAGTAG
AGGATACGAAGAAATCATGGAAAGAGAAGCAAGGGCAGGAAAACTCAGAGGTTACTGTTGATGATATTGCGATGGTTGTA
TCCAGCTGGACTGGGGTGCCTGTATCTAAAATCGCCCAAACTGAAACAGATAAGCTTCTCAATATGGAAAGCATTCTTCA
CTCCCGTGTCATTGGCCAGGATGAAGCAGTTGTAGCTGTTGCAAAAGCAGTTAGACGTGCAAGAGCAGGATTAAAAGATC
CTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTTGGTAAAACAGAGCTTGCGCGAGCACTTGCTGAA
TCCATTTTCGGTGATGAGGAAGCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCAACTTCAAGACTTGT
CGGTTCACCTCCGGGATATGTGGGATACGATGAAGGCGGCCAATTAACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCG
TGCTTCTTGATGAGATTGAGAAAGCGCACCCTGATGTCTTCAATATCCTCCTGCAAGTTCTTGAAGACGGACGATTGACT
GATTCTAAGGGACGTACAGTCGATTTCCGTAATACCATTCTGATTATGACGTCAAACGTCGGAGCAAGTGAGCTGAAACG
CAATAAATATGTCGGCTTTAACGTTCAGGATGAGACGCAAAATCATAAAGACATGAAAGATAAAGTGATGGGTGAATTGA
AACGTGCGTTCAGACCGGAGTTTATCAACCGGATTGATGAAATCATTGTCTTCCATTCACTTGAGAAAAAACATCTCACT
GAAATCGTGTCATTGATGTCTGATCAATTAACAAAACGCCTGAAAGAACAGGATCTTTCTATCGAATTGACCGATGCTGC
AAAAGCGAAAGTCGCGGAAGAGGGCGTTGACTTGGAATACGGTGCCCGTCCGTTAAGAAGAGCTATCCAAAAACATGTCG
AGGACCGTTTATCTGAAGAACTCCTCCGAGGAAATATTCATAAAGGACAGCATATCGTTCTCGATGTAGAAGACGGCGAA
TTTGTCGTAAAAACGACTGCTAAAACGAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
99.259 |
100 |
0.993 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.374 |
99.012 |
0.499 |
| clpC | Streptococcus thermophilus LMD-9 |
46.602 |
100 |
0.474 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.359 |
100 |
0.472 |
| clpC | Streptococcus pneumoniae Rx1 |
45.241 |
99.877 |
0.452 |
| clpC | Streptococcus pneumoniae D39 |
45.241 |
99.877 |
0.452 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.117 |
99.877 |
0.451 |
| clpC | Streptococcus mutans UA159 |
43.462 |
100 |
0.443 |
| clpE | Streptococcus mutans UA159 |
53.159 |
80.123 |
0.426 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
48.523 |
87.778 |
0.426 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.612 |
76.914 |
0.412 |
| clpE | Streptococcus pneumoniae Rx1 |
53.612 |
76.914 |
0.412 |
| clpE | Streptococcus pneumoniae D39 |
53.612 |
76.914 |
0.412 |
| clpE | Streptococcus pneumoniae R6 |
53.612 |
76.914 |
0.412 |