Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPPC18_RS03825 Genome accession   NC_017742
Coordinates   814932..816452 (-) Length   506 a.a.
NCBI ID   WP_000611113.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan18     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 809932..821452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC18_RS03810 (HPPC18_03895) hofF 810412..811911 (+) 1500 WP_001108208.1 outer membrane beta-barrel protein HofF -
  HPPC18_RS03815 (HPPC18_03900) - 812123..812803 (-) 681 WP_014662384.1 restriction endonuclease subunit S -
  HPPC18_RS03820 (HPPC18_03905) - 812847..814907 (-) 2061 WP_001158864.1 heavy metal translocating P-type ATPase -
  HPPC18_RS03825 (HPPC18_03910) comM 814932..816452 (-) 1521 WP_000611113.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPPC18_RS03830 (HPPC18_03915) def 816455..816982 (-) 528 WP_001185862.1 peptide deformylase -
  HPPC18_RS03835 (HPPC18_03920) clpP 816987..817574 (-) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPPC18_RS03840 (HPPC18_03925) tig 817595..818950 (-) 1356 WP_001047799.1 trigger factor -
  HPPC18_RS03845 (HPPC18_03930) - 819063..819899 (-) 837 WP_001037787.1 outer membrane protein -
  HPPC18_RS03850 (HPPC18_03935) hpaA 819921..820703 (-) 783 WP_000855930.1 flagellar sheath lipoprotein HpaA -
  HPPC18_RS03855 (HPPC18_03940) moaC 820822..821298 (-) 477 WP_001131545.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57277.28 Da        Isoelectric Point: 8.3899

>NTDB_id=42530 HPPC18_RS03825 WP_000611113.1 814932..816452(-) (comM) [Helicobacter pylori PeCan18]
MINTIFCTTMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEVQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=42530 HPPC18_RS03825 WP_000611113.1 814932..816452(-) (comM) [Helicobacter pylori PeCan18]
ATGATTAACACGATATTTTGCACGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCCAAAA
TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCCGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATTTTACCCCCCTTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGCTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCCTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGACAC
CTCTTTTTTATTCGTGGGGGCTCAAAACCCTTGCCTGTGCGGGAATTTACTCAGCACCACCAAAGCATGCCGTTGCCAAG
ATAGAGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAATACTGAAG
TGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.838

100

0.968
  comM Acinetobacter baylyi ADP1

36.399

100

0.368
  comM Legionella pneumophila str. Paris

36.382

99.407

0.362
  comM Legionella pneumophila strain ERS1305867

36.382

99.407

0.362

Multiple sequence alignment