Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IHN46_RS13275 Genome accession   NZ_CP062249
Coordinates   2730704..2731441 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AML002_ev01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725704..2736441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHN46_RS13260 clpC 2726158..2728731 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IHN46_RS13265 yfiH 2728861..2729592 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  IHN46_RS13270 rluD 2729589..2730569 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IHN46_RS13275 comL 2730704..2731441 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IHN46_RS13280 raiA 2731712..2732053 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IHN46_RS13285 pheL 2732157..2732204 (+) 48 WP_010723158.1 phe operon leader peptide -
  IHN46_RS13290 pheA 2732303..2733463 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  IHN46_RS13295 tyrA 2733506..2734627 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IHN46_RS13300 aroF 2734638..2735708 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IHN46_RS13305 yfiL 2735918..2736283 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=425189 IHN46_RS13275 WP_000197686.1 2730704..2731441(+) (comL) [Escherichia coli strain AML002_ev01]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=425189 IHN46_RS13275 WP_000197686.1 2730704..2731441(+) (comL) [Escherichia coli strain AML002_ev01]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376