Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   G5B91_RS21960 Genome accession   NZ_CP049140
Coordinates   4594180..4594815 (-) Length   211 a.a.
NCBI ID   WP_024766675.1    Uniprot ID   A0A1B8T0F4
Organism   Pseudomonas nitroreducens strain HBP1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4589180..4599815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5B91_RS21930 (G5B91_21865) murB 4590243..4591262 (-) 1020 WP_038803719.1 UDP-N-acetylmuramate dehydrogenase -
  G5B91_RS21935 (G5B91_21870) - 4591259..4591723 (-) 465 WP_024766673.1 low molecular weight protein-tyrosine-phosphatase -
  G5B91_RS21940 (G5B91_21875) kdsB 4591723..4592487 (-) 765 WP_038803718.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  G5B91_RS21945 (G5B91_21880) - 4592492..4592677 (-) 186 WP_009621404.1 Trm112 family protein -
  G5B91_RS21950 (G5B91_21885) lpxK 4592736..4593734 (-) 999 WP_038803717.1 tetraacyldisaccharide 4'-kinase -
  G5B91_RS21955 (G5B91_21890) - 4593734..4594183 (-) 450 WP_024766674.1 ExbD/TolR family protein -
  G5B91_RS21960 (G5B91_21895) exbB 4594180..4594815 (-) 636 WP_024766675.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  G5B91_RS21965 (G5B91_21900) comA 4594887..4597097 (-) 2211 WP_037007630.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G5B91_RS21970 (G5B91_21905) - 4597260..4597790 (+) 531 WP_024766677.1 DUF2062 domain-containing protein -
  G5B91_RS21975 (G5B91_21910) - 4597938..4599185 (-) 1248 WP_024766678.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22981.25 Da        Isoelectric Point: 7.2808

>NTDB_id=424923 G5B91_RS21960 WP_024766675.1 4594180..4594815(-) (exbB) [Pseudomonas nitroreducens strain HBP1]
MWELVKAGGWMMLPILLSSVAAMAIVAERLWTLRLSRVAPPQLLGQVWKQIKDRKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAA
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=424923 G5B91_RS21960 WP_024766675.1 4594180..4594815(-) (exbB) [Pseudomonas nitroreducens strain HBP1]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCGTCGCTGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCTTGCGCTTGAGCCGCGTGGCCCCGCCGCAGTTGCTCGGCCAGGTATGGAAGCAGATCAAGGACA
GGAAGATGAACAGCCAGGCCCTCAAGGACCTGCGCGCATCCTCCCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAAATCATGAAGGAGTGCATCGAGGAAGCCGCTTCCCGCGTGATCCACGAGCTGGAGCGCTACCT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGATGGCATGGCCAACGCGCCGATGCTCGCCGGCGGCATCTCCAAGGCCCTGATCACCACCGCGGCC
GGCCTGATCGTGGCGATCCCCGCAGTATTCTTCCATCGTTACCTGCTGCGCCGCGTCGATGAGCTGGTCATCGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGACCGCGAAGTCGACTTCGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8T0F4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806