NTDB

Overview

Name	radA/sms	Type	Machinery gene
Locus tag	HPSH112_RS01160	Genome accession	NC_017741
Coordinates	230224..231570 (+)	Length	448 a.a.
NCBI ID	WP_014662196.1	Uniprot ID	-
Organism	Helicobacter pylori Shi112
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 225224..236570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSH112_RS01130 (HPSH112_01145)	-	225381..226211 (+)	831	WP_041199786.1	beta-1,4-N-acetylgalactosamyltransferase	-
HPSH112_RS01135 (HPSH112_01150)	-	226227..226778 (-)	552	WP_000846558.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
HPSH112_RS01140 (HPSH112_01155)	-	226923..227384 (+)	462	WP_014662195.1	helix-turn-helix domain-containing protein	-
HPSH112_RS01145 (HPSH112_01160)	-	227557..228720 (+)	1164	WP_000941704.1	NifS family cysteine desulfurase	-
HPSH112_RS01150 (HPSH112_01165)	-	228742..229722 (+)	981	WP_001051963.1	iron-sulfur cluster assembly scaffold protein NifU	-
HPSH112_RS01155 (HPSH112_01170)	-	229878..230111 (+)	234	WP_000450342.1	ribbon-helix-helix domain-containing protein	-
HPSH112_RS01160 (HPSH112_01175)	radA/sms	230224..231570 (+)	1347	WP_014662196.1	DNA repair protein RadA	Machinery gene
HPSH112_RS01165 (HPSH112_01180)	msrB	231693..232772 (+)	1080	WP_000866564.1	peptide-methionine (R)-S-oxide reductase MsrB	-
HPSH112_RS01170 (HPSH112_01185)	-	232925..233713 (+)	789	WP_001140588.1	hypothetical protein	-
HPSH112_RS01175 (HPSH112_01190)	-	233716..233940 (+)	225	WP_000188956.1	hypothetical protein	-
HPSH112_RS01180 (HPSH112_01195)	-	233937..234416 (+)	480	WP_000571647.1	hypothetical protein	-
HPSH112_RS01185 (HPSH112_01200)	comB2	234413..234703 (+)	291	WP_000736104.1	TrbC/VirB2 family protein	Machinery gene
HPSH112_RS01190 (HPSH112_01205)	comB3	234713..234976 (+)	264	WP_001177721.1	hypothetical protein	Machinery gene
HPSH112_RS01195 (HPSH112_01210)	-	234988..235224 (+)	237	WP_000806906.1	hypothetical protein	-
HPSH112_RS01200	-	235224..236107 (+)	884	Protein_227	transporter	-

Sequence

Protein

Download Length: 448 a.a. Molecular weight: 49452.35 Da Isoelectric Point: 7.8021

                                >NTDB_id=42476 HPSH112_RS01160 WP_014662196.1 230224..231570(+) (radA/sms) [Helicobacter pylori Shi112]

MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQAQKEVLNTLKNPIPKAQKSVSIAEIEHEEVIKFSSTQSELDI

VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN

IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRNIAVFIIGHITKEGSIAGPRVLEHMVDSVLYFEG

DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSQEEPMEGSAITITLEGSRALILEIQALVSECSFGAP

KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI

LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide

Download Length: 1347 bp

                                >NTDB_id=42476 HPSH112_RS01160 WP_014662196.1 230224..231570(+) (radA/sms) [Helicobacter pylori Shi112]

TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGCTAGGCAAGTGCGTTCAATG

CAACGCATGGGAAAGTTTTATAGAATTGAACCAAGCTCAAAAGGAAGTTTTAAACACGCTTAAAAATCCGATCCCAAAAG

CGCAAAAAAGCGTTTCTATCGCTGAAATTGAGCATGAAGAAGTGATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT

GTTTTAGGTGGGGGGATCGCTAAAGGGGGGTTGTATTTGGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT

AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA

TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT

ATTGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCACCCGG

CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCTAAAACAAGAAATATTGCTGTTTTTATCATCG

GTCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGAGTGTTAGAGCATATGGTGGATAGCGTGCTGTATTTTGAAGGC

GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAAAT

GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAAGCTTCAAGCTTGTTTTTTTCTCAAGAAGAGCCTATGGAGGGGAGCGCGA

TCACCATCACTTTAGAAGGCTCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTCGGAGCGCCC

AAACGATTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTCATCGCTTTATTAGAAAAAAAGCTAGAAATCCCCTT

AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGGATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA

GCATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT

TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCTAAAAAACC

CAGCCAAAAAACCTCGATCAAATGCTATGAAGCCAATGCGGTGGGCAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(62-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.838	95.313	0.446
radA	Streptococcus pneumoniae Rx1	46.714	95.089	0.444
radA	Streptococcus pneumoniae D39	46.714	95.089	0.444
radA	Streptococcus pneumoniae R6	46.714	95.089	0.444
radA	Streptococcus pneumoniae TIGR4	46.714	95.089	0.444
radA	Streptococcus mitis SK321	46.714	95.089	0.444
radA	Streptococcus mitis NCTC 12261	46.479	95.089	0.442

Detailed information NTG0042476