Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | BCOA_RS24760 | Genome accession | NC_016023 |
| Coordinates | 1591598..1591957 (-) | Length | 119 a.a. |
| NCBI ID | WP_014096779.1 | Uniprot ID | - |
| Organism | Heyndrickxia coagulans 36D1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1586598..1596957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCOA_RS24735 (Bcoa_1468) | spoIIID | 1587347..1587613 (+) | 267 | WP_014096774.1 | sporulation transcriptional regulator SpoIIID | - |
| BCOA_RS24740 (Bcoa_1469) | - | 1588003..1589004 (+) | 1002 | WP_014096775.1 | rod shape-determining protein | - |
| BCOA_RS24745 (Bcoa_1470) | - | 1589043..1589831 (+) | 789 | WP_014096776.1 | flagellar hook-basal body protein | - |
| BCOA_RS24750 (Bcoa_1471) | - | 1589859..1590689 (+) | 831 | WP_014096777.1 | flagellar hook-basal body protein | - |
| BCOA_RS24755 (Bcoa_1472) | fabZ | 1590817..1591242 (+) | 426 | WP_014096778.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| BCOA_RS35320 (Bcoa_1473) | - | 1591427..1591591 (-) | 165 | WP_013860712.1 | hypothetical protein | - |
| BCOA_RS24760 (Bcoa_1474) | ssbB | 1591598..1591957 (-) | 360 | WP_014096779.1 | single-stranded DNA-binding protein | Machinery gene |
| BCOA_RS24765 (Bcoa_1475) | - | 1592264..1592686 (+) | 423 | WP_014096780.1 | YwpF-like family protein | - |
| BCOA_RS24770 (Bcoa_1476) | - | 1592718..1593152 (-) | 435 | WP_014096781.1 | DUF4944 domain-containing protein | - |
| BCOA_RS24775 (Bcoa_1477) | - | 1593240..1596041 (-) | 2802 | WP_014096782.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13455.36 Da Isoelectric Point: 9.9022
>NTDB_id=42478 BCOA_RS24760 WP_014096779.1 1591598..1591957(-) (ssbB) [Heyndrickxia coagulans 36D1]
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKEGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKEGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG
Nucleotide
Download Length: 360 bp
>NTDB_id=42478 BCOA_RS24760 WP_014096779.1 1591598..1591957(-) (ssbB) [Heyndrickxia coagulans 36D1]
TTGATTAACCAGGTCACATTAGTTGGAAGGCTTACAAAAGATCCGGATCTTCACTACACAGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGTCGGATTCAGACCCGC
CATTATGATAATAAAGAAGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG
TTGATTAACCAGGTCACATTAGTTGGAAGGCTTACAAAAGATCCGGATCTTCACTACACAGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGTCGGATTCAGACCCGC
CATTATGATAATAAAGAAGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.818 |
92.437 |
0.571 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.83 |
89.076 |
0.471 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.552 |
97.479 |
0.454 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.379 |
97.479 |
0.403 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.667 |
90.756 |
0.378 |
| ssbA | Streptococcus mutans UA159 |
40.741 |
90.756 |
0.37 |