Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPSH112_RS01190 | Genome accession | NC_017741 |
| Coordinates | 234713..234976 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177721.1 | Uniprot ID | B3VT61 |
| Organism | Helicobacter pylori Shi112 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 229713..239976
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH112_RS01155 (HPSH112_01170) | - | 229878..230111 (+) | 234 | WP_000450342.1 | ribbon-helix-helix domain-containing protein | - |
| HPSH112_RS01160 (HPSH112_01175) | radA/sms | 230224..231570 (+) | 1347 | WP_014662196.1 | DNA repair protein RadA | Machinery gene |
| HPSH112_RS01165 (HPSH112_01180) | msrB | 231693..232772 (+) | 1080 | WP_000866564.1 | peptide-methionine (R)-S-oxide reductase MsrB | - |
| HPSH112_RS01170 (HPSH112_01185) | - | 232925..233713 (+) | 789 | WP_001140588.1 | hypothetical protein | - |
| HPSH112_RS01175 (HPSH112_01190) | - | 233716..233940 (+) | 225 | WP_000188956.1 | hypothetical protein | - |
| HPSH112_RS01180 (HPSH112_01195) | - | 233937..234416 (+) | 480 | WP_000571647.1 | hypothetical protein | - |
| HPSH112_RS01185 (HPSH112_01200) | comB2 | 234413..234703 (+) | 291 | WP_000736104.1 | TrbC/VirB2 family protein | Machinery gene |
| HPSH112_RS01190 (HPSH112_01205) | comB3 | 234713..234976 (+) | 264 | WP_001177721.1 | hypothetical protein | Machinery gene |
| HPSH112_RS01195 (HPSH112_01210) | - | 234988..235224 (+) | 237 | WP_000806906.1 | hypothetical protein | - |
| HPSH112_RS01200 | - | 235224..236107 (+) | 884 | Protein_227 | transporter | - |
| HPSH112_RS01205 (HPSH112_01225) | tnpA | 236297..236734 (+) | 438 | WP_041199789.1 | IS200/IS605 family transposase | - |
| HPSH112_RS01210 (HPSH112_01230) | - | 236697..237844 (+) | 1148 | Protein_229 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| HPSH112_RS01215 (HPSH112_01235) | - | 237920..238648 (+) | 729 | Protein_230 | FtsK/SpoIIIE domain-containing protein | - |
| HPSH112_RS01220 (HPSH112_01240) | - | 238694..239953 (-) | 1260 | WP_001274344.1 | RNA-guided endonuclease InsQ/TnpB family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9946.74 Da Isoelectric Point: 5.7206
>NTDB_id=42478 HPSH112_RS01190 WP_001177721.1 234713..234976(+) (comB3) [Helicobacter pylori Shi112]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=42478 HPSH112_RS01190 WP_001177721.1 234713..234976(+) (comB3) [Helicobacter pylori Shi112]
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTTCCATTTGTGATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCATGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTTCCATTTGTGATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCATGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |